Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   A6J74_RS10445 Genome accession   NZ_CP020437
Coordinates   1700790..1701113 (+) Length   107 a.a.
NCBI ID   WP_000578873.1    Uniprot ID   A0A2B5EZM0
Organism   Bacillus sp. FDAARGOS_235     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1695790..1706113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J74_RS10430 (A6J74_10420) - 1696318..1697685 (-) 1368 WP_000028365.1 aldehyde dehydrogenase -
  A6J74_RS10435 (A6J74_10425) inhA1 1697843..1700230 (-) 2388 WP_001035956.1 M6 family metalloprotease immune inhibitor InhA1 -
  A6J74_RS10440 (A6J74_10430) - 1700576..1700710 (+) 135 WP_000276222.1 anti-repressor SinI family protein -
  A6J74_RS10445 (A6J74_10435) sinR 1700790..1701113 (+) 324 WP_000578873.1 helix-turn-helix domain-containing protein Regulator
  A6J74_RS10450 (A6J74_10440) calY 1701188..1701781 (-) 594 WP_000053720.1 biofilm matrix protein CalY -
  A6J74_RS10455 (A6J74_10445) - 1702209..1703006 (-) 798 WP_080609482.1 DUF4047 domain-containing protein -
  A6J74_RS10460 (A6J74_10450) - 1703127..1703714 (-) 588 WP_000172853.1 CalY family protein -
  A6J74_RS10465 (A6J74_10455) sipW 1703779..1704348 (-) 570 WP_000767788.1 signal peptidase I SipW -
  A6J74_RS10470 (A6J74_10460) - 1704543..1705829 (-) 1287 WP_000247036.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12389.26 Da        Isoelectric Point: 9.6238

>NTDB_id=223039 A6J74_RS10445 WP_000578873.1 1700790..1701113(+) (sinR) [Bacillus sp. FDAARGOS_235]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETEKEARLDSEWTQLV
KDAMNSGVSKEQFREFLEFTQWKKNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=223039 A6J74_RS10445 WP_000578873.1 1700790..1701113(+) (sinR) [Bacillus sp. FDAARGOS_235]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGACGAAACAGAAAAGGAAGCTCGCCTAGACTCCGAATGGACACAGCTCGTT
AAAGACGCAATGAACTCTGGTGTCTCTAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAGTGGAAGAAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B5EZM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

68.807

100

0.701

Multiple sequence alignment