Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C2I05_RS17865 Genome accession   NZ_CP026039
Coordinates   3375829..3376965 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK1_2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3370829..3381965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS17845 (C2I05_17840) uxaA 3371279..3372772 (+) 1494 WP_249848260.1 altronate dehydratase family protein -
  C2I05_RS17850 (C2I05_17845) yjnA 3372811..3373575 (-) 765 WP_038828729.1 sulfite exporter TauE/SafE family protein -
  C2I05_RS17855 (C2I05_17850) yjoA 3373800..3374264 (-) 465 WP_014479541.1 DinB family protein -
  C2I05_RS17860 (C2I05_17855) yjoB 3374413..3375684 (+) 1272 WP_249848258.1 ATPase YjoB -
  C2I05_RS17865 (C2I05_17860) rapC 3375829..3376965 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  C2I05_RS17870 (C2I05_17865) phrA 3376955..3377089 (+) 135 WP_128747066.1 phosphatase RapA inhibitor PhrA -
  C2I05_RS17875 (C2I05_17870) yjpA 3377119..3377376 (-) 258 WP_003232731.1 YciI family protein -
  C2I05_RS17880 (C2I05_17875) xlyB 3377497..3378450 (+) 954 WP_129092966.1 N-acetylmuramoyl-L-alanine amidase -
  C2I05_RS17885 (C2I05_17880) yjqA 3378490..3378867 (-) 378 WP_015715726.1 PH domain-containing protein -
  C2I05_RS17890 (C2I05_17885) pghB 3378973..3379575 (+) 603 WP_249848256.1 poly-gamma-glutamate hydrolase family protein -
  C2I05_RS17895 (C2I05_17890) xpdC 3379652..3380487 (+) 836 Protein_3465 manganese catalase family protein -
  C2I05_RS17900 (C2I05_17895) xkdA 3380531..3381127 (-) 597 WP_024572596.1 ImmA/IrrE family metallo-endopeptidase -
  C2I05_RS17905 (C2I05_17900) xre 3381290..3381631 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=223016 C2I05_RS17865 WP_015252291.1 3375829..3376965(+) (rapC) [Bacillus subtilis strain PK1_2]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=223016 C2I05_RS17865 WP_015252291.1 3375829..3376965(+) (rapC) [Bacillus subtilis strain PK1_2]
TTGAGGATGAAGCAGACGATTCCGTCCTCATATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTGGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTACTATAAACGGGCAGAAAAGAATCTTGCTCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAGGAGCTGGCGCATGATGCTGCCCAATTCTATAT
TGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418