Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A6J72_RS06470 Genome accession   NZ_CP020433
Coordinates   1279158..1280573 (+) Length   471 a.a.
NCBI ID   WP_082312027.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1274158..1285573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS06450 (A6J72_06460) - 1275068..1276084 (-) 1017 WP_003076007.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  A6J72_RS06455 (A6J72_06465) - 1277148..1278182 (+) 1035 WP_021003273.1 S66 peptidase family protein -
  A6J72_RS06460 (A6J72_06470) - 1278276..1278719 (+) 444 WP_003073939.1 dUTP diphosphatase -
  A6J72_RS06465 (A6J72_06475) - 1278729..1279200 (+) 472 Protein_1236 cysteine hydrolase family protein -
  A6J72_RS06470 (A6J72_06480) radA 1279158..1280573 (+) 1416 WP_082312027.1 DNA repair protein RadA Machinery gene
  A6J72_RS06475 (A6J72_06485) gltX 1280773..1282230 (+) 1458 WP_105255965.1 glutamate--tRNA ligase -
  A6J72_RS06480 (A6J72_06490) dapD 1282348..1283046 (+) 699 WP_003075982.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  A6J72_RS06485 (A6J72_06495) - 1283059..1284189 (+) 1131 WP_082312029.1 N-acetyldiaminopimelate deacetylase -
  A6J72_RS06490 (A6J72_06500) - 1284235..1284762 (+) 528 WP_082312030.1 5-formyltetrahydrofolate cyclo-ligase -
  A6J72_RS06495 (A6J72_06505) - 1284755..1285435 (+) 681 WP_082312031.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 51702.24 Da        Isoelectric Point: 6.5105

>NTDB_id=223008 A6J72_RS06470 WP_082312027.1 1279158..1280573(+) (radA) [Streptococcus intermedius strain FDAARGOS_233]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEIEVAEVKNARVSLTGEKTQPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSNKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIHPDFLIIDSIQTVMSPEISSVQGSVSQLREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVIGVTTVGEVLKKVFDEVNKN

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=223008 A6J72_RS06470 WP_082312027.1 1279158..1280573(+) (radA) [Streptococcus intermedius strain FDAARGOS_233]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGATTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACAGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGTGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGCGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTATCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCATCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGTTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAACATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGACCTATTTTAGCGGAAGTA
CAAGCCCTAGTAACACCGACTGTCTTTGGGAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAATTGGTG
TGACAACTGTTGGTGAGGTTTTGAAAAAGGTGTTTGACGAAGTAAATAAAAACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-231)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.938

95.966

0.854
  radA Streptococcus pneumoniae D39

88.938

95.966

0.854
  radA Streptococcus pneumoniae R6

88.938

95.966

0.854
  radA Streptococcus pneumoniae TIGR4

88.938

95.966

0.854
  radA Streptococcus mitis SK321

88.938

95.966

0.854
  radA Streptococcus mitis NCTC 12261

88.717

95.966

0.851
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

96.178

0.597

Multiple sequence alignment