Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   A6J72_RS02910 Genome accession   NZ_CP020433
Coordinates   586523..587233 (+) Length   236 a.a.
NCBI ID   WP_082311738.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 581523..592233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS02900 (A6J72_02895) treC 582521..584164 (-) 1644 WP_082311736.1 alpha,alpha-phosphotrehalase -
  A6J72_RS02905 (A6J72_02900) treP 584332..586344 (-) 2013 WP_082311737.1 PTS system trehalose-specific EIIBC component -
  A6J72_RS02910 (A6J72_02905) treR 586523..587233 (+) 711 WP_082311738.1 trehalose operon repressor Regulator
  A6J72_RS02915 (A6J72_02910) - 587292..588632 (-) 1341 WP_003078229.1 hemolysin family protein -
  A6J72_RS02920 (A6J72_02915) - 588721..590367 (-) 1647 WP_009568183.1 phosphoenolpyruvate carboxykinase (ATP) -
  A6J72_RS02925 (A6J72_02920) - 590590..591714 (-) 1125 WP_082311739.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27597.65 Da        Isoelectric Point: 8.2574

>NTDB_id=222986 A6J72_RS02910 WP_082311738.1 586523..587233(+) (treR) [Streptococcus intermedius strain FDAARGOS_233]
MKKYEQIFKLLKQDILNETYQIDDYLPSEHELVQTYKVSRDTIRKSLDLLQKAELIQKIRGQGSKVIKQAQIDFPVSNLT
SYQELVQQHGINSKTNLIQLEKITVDKKLSNLTGFPEYRLVWRIVRQRVVDDVASVLDIDYLDKTLVPSLTREIAEQSIY
AYLEEELGLRIAYAQKEITIDPATNRDQILMDIGTDQHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFIDFAKRQK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=222986 A6J72_RS02910 WP_082311738.1 586523..587233(+) (treR) [Streptococcus intermedius strain FDAARGOS_233]
ATGAAAAAATATGAACAAATTTTCAAACTCCTAAAACAGGATATTCTAAATGAAACATATCAGATCGATGATTATCTCCC
TAGTGAACACGAACTCGTACAAACTTACAAAGTCAGTCGTGACACCATTCGTAAGTCACTTGATTTACTTCAAAAAGCAG
AGCTCATCCAAAAAATAAGAGGACAAGGTTCTAAAGTCATCAAACAAGCACAGATTGATTTTCCTGTCTCCAACCTGACT
AGCTACCAAGAACTCGTGCAGCAGCATGGAATAAATTCTAAAACTAATCTCATCCAATTAGAGAAAATTACAGTTGATAA
AAAATTATCTAATCTCACTGGTTTTCCTGAATATCGTCTGGTATGGCGAATTGTCCGCCAAAGAGTAGTCGATGATGTCG
CTTCTGTTTTAGATATTGATTATCTTGATAAAACTCTTGTCCCTTCCTTAACTAGAGAAATAGCAGAACAATCGATTTAT
GCTTATTTAGAAGAAGAATTAGGACTGCGCATTGCCTATGCCCAAAAAGAAATTACGATTGATCCAGCTACAAACCGTGA
CCAAATCTTGATGGATATCGGAACTGACCAGCATGTCGTTTCTGTCAAGTCCAAAGTTTACCTTGCAGATGGACAACAAT
TTCAATTTACAGATAGTCGTCATAAACTCGAAAAATTCCGTTTTATTGACTTTGCTAAGCGACAAAAATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(90-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

63.559

100

0.636

Multiple sequence alignment