Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A6J72_RS02325 Genome accession   NZ_CP020433
Coordinates   476723..478525 (-) Length   600 a.a.
NCBI ID   WP_082311684.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 471723..483525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS02310 (A6J72_02295) - 474283..474768 (-) 486 WP_082311682.1 LURP-one-related/scramblase family protein -
  A6J72_RS02315 (A6J72_02305) prsA 474993..475931 (-) 939 WP_003073287.1 peptidylprolyl isomerase PrsA -
  A6J72_RS02320 (A6J72_02310) - 476038..476721 (-) 684 WP_082311683.1 O-methyltransferase -
  A6J72_RS02325 (A6J72_02315) pepF 476723..478525 (-) 1803 WP_082311684.1 oligoendopeptidase F Regulator
  A6J72_RS02330 (A6J72_02320) coiA 478477..479508 (-) 1032 WP_082311685.1 competence protein CoiA Machinery gene
  A6J72_RS02335 (A6J72_02325) celB 479597..479893 (-) 297 Protein_458 PTS cellobiose transporter subunit IIC -
  A6J72_RS02340 (A6J72_02330) - 479887..480873 (-) 987 Protein_459 6-phospho-beta-glucosidase -
  A6J72_RS02345 (A6J72_02335) - 481155..482324 (-) 1170 WP_082311687.1 MFS transporter -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69252.56 Da        Isoelectric Point: 4.6864

>NTDB_id=222981 A6J72_RS02325 WP_082311684.1 476723..478525(-) (pepF) [Streptococcus intermedius strain FDAARGOS_233]
MAKQRNEIEEKYTWDLTTIFPTDEAFEMELAQVSKELKEASHLAGHLLDSADSLLKTTAIQMDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMAIYSEFGQVFAFYEPEFMAITDEQYQAFLAEKPELQVYQHFFDKLLQKKPHILSQREEELLAGA
GEIFSAAGDTFGILDNADIVFPIVHDEEGNEVQLTHGNYISLVEAKNRTVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSANFIPENVYESLVSAVNKHLPLLHRYVQLRAKILGISDLKMYDVYTPLSEVDYKFTYEAALT
KAEEVLAILGDDYLNRVKKAFSDRWIDVCENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVDDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNDLYADLNEKYYGLTKEDNPQIQYEWARIPHFYYDYYVFQYATGFSAASALADKIVNGTQEDKEKYLHYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=222981 A6J72_RS02325 WP_082311684.1 476723..478525(-) (pepF) [Streptococcus intermedius strain FDAARGOS_233]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATATACTTGGGATTTAACAACGATTTTCCCAACAGATGAAGCGTTTGA
AATGGAATTAGCGCAAGTTTCAAAGGAATTAAAAGAAGCTAGTCATTTAGCAGGTCATCTTTTGGATTCAGCCGATAGCC
TTTTAAAAACGACAGCCATCCAAATGGATTTAATGCGTCGCATTGAAAAGCTCTATTCTTATGCTCACATGAAAAATGAC
CAAGATACGCGTGTGGCAAAATATCAAGAGTATCAAGCTAAGGGCATGGCTATTTATAGCGAGTTCGGGCAGGTGTTTGC
TTTCTATGAGCCAGAATTTATGGCAATTACAGATGAACAGTACCAGGCTTTCTTAGCTGAAAAACCTGAATTGCAAGTCT
ATCAGCACTTCTTTGACAAGTTATTGCAAAAGAAACCTCACATCCTTTCTCAACGTGAGGAAGAATTGTTGGCAGGTGCT
GGTGAAATTTTTAGTGCTGCTGGTGATACTTTTGGAATTTTGGATAATGCCGATATCGTCTTTCCAATTGTACATGACGA
AGAAGGCAATGAAGTACAATTAACGCATGGAAATTACATTAGCTTAGTGGAGGCAAAAAATCGTACAGTCCGTAAGGAAG
CTTATGAAGCACTTTATAGTGTTTATGAGCAATATCAACATACTTATGCTAAGACACTTCAAACAAATGTTAAAGTGCAT
AATTACAACGCAAAAGTACGTAAGTTTTCTTCAGCACGCGAAGCAGCCTTGTCTGCTAACTTTATTCCAGAAAATGTTTA
TGAGAGTTTGGTGTCTGCAGTCAACAAACATTTACCACTCTTACATCGCTATGTTCAGTTACGAGCTAAGATTTTAGGCA
TTTCAGATCTCAAGATGTATGACGTTTATACACCGCTATCAGAGGTAGATTATAAATTTACCTATGAAGCAGCTTTGACG
AAAGCGGAAGAAGTTTTAGCAATTCTTGGAGATGATTATCTTAACCGAGTGAAAAAAGCCTTTTCAGATCGTTGGATTGA
TGTTTGTGAGAATCAAGGTAAACGGTCAGGAGCTTATTCTGGTGGCTCTTACGATACTAATGCTTTTATGTTGCTGAATT
GGCAAGATACCTTAGATAATCTCTTCACCTTGGTTCATGAAACGGGTCATAGTATGCATTCTAGCTATACTCGTGAAACA
CAGCCTTATGTTTATGGTGATTATTCTATTTTCTTAGCTGAGATTGCTTCTACTACCAATGAAAATATACTGACGGAGAA
ATTATTGGAAGAAGTAGATGACGATCAAACTCGTTTTGCGATTCTGAATCATTTCTTGGATGGCTTCCGCGGAACTGTTT
TCCGCCAAACTCAATTTGCTGAGTTTGAGCATGCTATCCATAAGGCTGATCAAGAAGGTCAAGTCTTAACTAGTGAATTT
TTGAATGATTTATACGCAGATTTGAACGAAAAATATTATGGCTTGACGAAAGAAGATAATCCACAAATTCAATATGAATG
GGCACGGATTCCGCATTTTTACTATGACTATTATGTATTTCAATATGCGACTGGTTTTTCAGCAGCATCTGCTTTAGCTG
ATAAAATTGTCAATGGAACACAAGAAGATAAAGAGAAATATCTCCATTATCTCAAAGCAGGAAATTCTGATTATCCACTG
AATGTCATTAAAAAAGCTGGTGTTGATATGGAAAAAGAAGACTATCTCAATGCTGCCTTTGCAGTCTTTGAACGTCGTCT
TGATGAATTTGAAGCACTTGTAGAAAAGTTAGGCTTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.456

99.333

0.68

Multiple sequence alignment