Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PFL_RS08940 Genome accession   NC_004129
Coordinates   1977107..1979338 (+) Length   743 a.a.
NCBI ID   WP_011060099.1    Uniprot ID   Q4KFT8
Organism   Pseudomonas protegens Pf-5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1972107..1984338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFL_RS08915 (PFL_1770) - 1973232..1973891 (+) 660 WP_011060094.1 transglutaminase-like domain-containing protein -
  PFL_RS08920 (PFL_1771) - 1973934..1974557 (+) 624 WP_011060095.1 glutathione S-transferase family protein -
  PFL_RS08925 (PFL_1772) - 1974690..1975622 (+) 933 WP_011060096.1 ABC transporter ATP-binding protein -
  PFL_RS08930 (PFL_1773) - 1975619..1976398 (+) 780 WP_011060097.1 ABC transporter permease -
  PFL_RS08935 (PFL_1774) - 1976452..1976967 (-) 516 WP_011060098.1 DUF2062 domain-containing protein -
  PFL_RS08940 (PFL_1775) comA 1977107..1979338 (+) 2232 WP_011060099.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PFL_RS08945 (PFL_1776) exbB 1979441..1980076 (+) 636 WP_011060100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PFL_RS08950 (PFL_1777) - 1980073..1980501 (+) 429 WP_011060101.1 ExbD/TolR family protein -
  PFL_RS08955 (PFL_1778) lpxK 1980501..1981511 (+) 1011 WP_011060102.1 tetraacyldisaccharide 4'-kinase -
  PFL_RS08960 (PFL_1779) - 1981536..1981721 (+) 186 WP_011060103.1 Trm112 family protein -
  PFL_RS08965 (PFL_1780) kdsB 1981718..1982482 (+) 765 WP_011060104.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PFL_RS08970 (PFL_1781) - 1982482..1982946 (+) 465 WP_011060105.1 low molecular weight protein-tyrosine-phosphatase -
  PFL_RS08975 (PFL_1782) murB 1982943..1983962 (+) 1020 WP_011060106.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81335.70 Da        Isoelectric Point: 10.8644

>NTDB_id=22298 PFL_RS08940 WP_011060099.1 1977107..1979338(+) (comA) [Pseudomonas protegens Pf-5]
MRSAMLALAAGLLALGFMPALPPGWLLLCMAILALMLLPFRTHPVAFFLFGFTWACVSAQSALDDRLAPRLESQTRWLEG
RVSGLPEQAGGVVRFELEDAQARRERLPRRMRLAWHEGPALKSGERWRLAVKLRQPMGLLNPQGFDYQAWLLARRIGATG
TVKAGQLLAPAPQAWRQGLRQRLLEVEAQGRGAGLAALVMGDGSGLTRQDWQLLQDTGTVHLMVISGQHISLLAGVIYFA
VAGLARHGLWPERLPWLPWACALAWLGALGYGLLAGFDVPVQRACVMVALVLLWRMRFRHLRAGWPLLLALNAVLLAEPL
ASLQAGFWLSFAAVAILILIFAGRLGAWSWWQGWTRAQWLIAIGLLPPLLALGLPISLSGPLANLLAVPWISFLVLPPAL
LGSLLLPVPYVGEGLLWLAGGLLDGLFRLLGLIAGGWPAWVPPQIPLWLWGMNALGCLLLLLPRGVPMRVLGWPLLLLAV
WPPLARVPEGEVEVWQLDVGQGLSFILRTRDHALLYDAGARVAEFDLGERVVVPTLHRLGIRRLDLMLLSHADNDHAGGA
QAVQRAMPVGEVRGGQPDALPAGLQARPCDSGLSWVWNGVRFRQWQWAAATDGNQASCVLQVEAAGERLLLTGDIDARAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLQRLAPDAVLISRGRGNAFGHPHPQVLARYRRLDMAIYDSAEQGALRLQL
GAFGAAHGLREQRRFWREPPAMP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=22298 PFL_RS08940 WP_011060099.1 1977107..1979338(+) (comA) [Pseudomonas protegens Pf-5]
ATGCGTAGCGCAATGCTGGCGCTGGCTGCGGGGCTGCTGGCGCTGGGTTTCATGCCGGCCTTGCCCCCAGGCTGGCTGCT
GCTGTGTATGGCGATACTGGCCTTGATGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGTTTCACCT
GGGCCTGTGTCTCCGCGCAGTCGGCCCTTGATGATCGCCTGGCGCCGCGCCTGGAGTCACAGACCCGCTGGCTGGAGGGG
CGGGTGAGCGGCCTGCCGGAGCAGGCGGGCGGCGTGGTGCGTTTCGAGCTGGAAGATGCCCAGGCCCGCCGTGAGCGGCT
GCCCCGGCGCATGCGGCTGGCCTGGCATGAGGGCCCGGCGCTCAAGAGTGGCGAGCGCTGGCGGCTGGCGGTCAAGCTTC
GCCAGCCGATGGGTTTGTTGAATCCCCAGGGCTTCGATTACCAGGCCTGGCTGCTGGCGCGCCGTATCGGCGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTGGCACCGGCCCCGCAGGCCTGGCGGCAAGGCTTGCGCCAGCGCTTGCTAGAGGTCGA
GGCCCAGGGGCGCGGTGCGGGGTTGGCGGCGCTGGTGATGGGCGACGGTTCCGGCCTGACGCGGCAAGACTGGCAGCTGT
TGCAGGACACCGGCACCGTCCACCTGATGGTGATTTCCGGGCAGCACATCAGCCTGCTGGCTGGGGTGATCTATTTCGCG
GTGGCCGGGCTGGCCCGCCATGGTCTCTGGCCCGAGCGCTTGCCGTGGTTGCCCTGGGCCTGTGCCCTGGCCTGGCTCGG
CGCCCTGGGCTACGGCCTGCTGGCGGGGTTCGATGTGCCAGTGCAGCGCGCCTGTGTGATGGTCGCCCTGGTACTGCTCT
GGCGCATGCGCTTTCGCCATCTGCGGGCCGGCTGGCCCCTGCTGCTGGCGTTGAATGCGGTGTTGCTGGCCGAGCCGCTG
GCCAGCTTGCAGGCGGGGTTCTGGCTGTCCTTTGCCGCAGTGGCAATCCTGATCTTGATCTTTGCCGGGCGCCTGGGGGC
GTGGAGCTGGTGGCAGGGCTGGACCCGGGCCCAATGGTTGATCGCCATTGGCCTGCTGCCGCCGTTGCTGGCTCTGGGGC
TGCCTATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGATCAGCTTTCTGGTGTTGCCGCCGGCTTTG
CTCGGCAGCCTGCTGCTGCCGGTGCCTTATGTGGGTGAGGGCCTGTTGTGGCTGGCCGGTGGATTGCTGGACGGGTTGTT
CCGCTTGCTCGGATTGATTGCCGGTGGGTGGCCGGCCTGGGTGCCGCCGCAGATCCCTCTGTGGCTATGGGGCATGAATG
CTCTGGGCTGCCTGTTGCTGCTGTTGCCCAGGGGCGTGCCCATGCGGGTTCTGGGTTGGCCGCTGTTGCTCCTGGCGGTC
TGGCCACCCCTGGCGCGCGTGCCCGAAGGCGAGGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGTCATTCATCCT
GCGTACCCGTGATCACGCCCTGCTGTATGACGCTGGCGCGCGGGTCGCCGAGTTCGACCTGGGAGAGCGAGTGGTAGTGC
CGACCCTGCACAGGCTCGGCATCCGGCGGCTGGACCTGATGCTGCTCAGCCATGCCGACAACGACCATGCCGGTGGCGCC
CAGGCGGTGCAGCGCGCAATGCCCGTGGGCGAGGTCCGCGGTGGCCAACCCGACGCCTTGCCCGCGGGCCTGCAGGCAAG
GCCTTGCGACAGTGGGCTGAGCTGGGTGTGGAATGGCGTGCGCTTTCGCCAGTGGCAATGGGCAGCGGCGACCGACGGCA
ATCAGGCTTCGTGCGTGCTCCAGGTCGAGGCTGCCGGCGAGCGCCTGCTGCTCACCGGGGACATCGACGCCCGTGCCGAA
CGAGCCTTGCTCGACAGCCCGCTGGCGGTGCGGACCCACTGGCTGCAGGCACCCCATCACGGCAGCCGCACCTCTTCATC
CATGGCCTTGCTGCAACGGCTGGCCCCCGACGCGGTGCTGATTTCCCGTGGGCGGGGCAATGCCTTCGGCCACCCCCATC
CTCAAGTGCTGGCACGCTATCGGCGCCTGGACATGGCAATTTATGACAGCGCCGAACAGGGCGCTCTGAGGCTGCAACTG
GGGGCTTTCGGGGCGGCGCATGGCCTTCGCGAGCAACGGCGATTCTGGCGTGAGCCGCCCGCAATGCCTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4KFT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.575

96.501

0.623

Multiple sequence alignment