Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   A6J72_RS01505 Genome accession   NZ_CP020433
Coordinates   291967..293319 (-) Length   450 a.a.
NCBI ID   WP_003072979.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 286967..298319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS01490 (A6J72_01485) rnc 289707..290405 (-) 699 WP_003072976.1 ribonuclease III -
  A6J72_RS01495 (A6J72_01490) - 290794..291153 (-) 360 WP_003072977.1 YbaN family protein -
  A6J72_RS01500 (A6J72_01495) vicX 291162..291965 (-) 804 WP_003075634.1 MBL fold metallo-hydrolase Regulator
  A6J72_RS01505 (A6J72_01500) micB 291967..293319 (-) 1353 WP_003072979.1 cell wall metabolism sensor histidine kinase VicK Regulator
  A6J72_RS01510 (A6J72_01505) micA 293312..294013 (-) 702 WP_003072980.1 response regulator YycF Regulator
  A6J72_RS01515 (A6J72_01510) - 294311..294652 (-) 342 WP_082311593.1 hypothetical protein -
  A6J72_RS01520 (A6J72_01515) - 294679..295992 (-) 1314 WP_082311594.1 glycosyltransferase family 4 protein -
  A6J72_RS01525 (A6J72_01520) - 295994..296992 (-) 999 WP_003072984.1 glycosyltransferase family 4 protein -
  A6J72_RS01530 (A6J72_01525) ccpA 297085..298089 (-) 1005 WP_020998737.1 catabolite control protein A Regulator

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 51225.43 Da        Isoelectric Point: 4.7207

>NTDB_id=222978 A6J72_RS01505 WP_003072979.1 291967..293319(-) (micB) [Streptococcus intermedius strain FDAARGOS_233]
MIDNIRQFVVSKDFVFVLLILGFILVITLLSLENRRDNVRIRQLNQKVKDLIAGDYSEVLDMQGGPEITDITNSINDLSE
VIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQIIMINDMATKQLGVKESDARKMNILKLLGIEDEYDLRDLITKVPE
LTIDSQDENGEFLSLRVRFALIRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALS
EPVAPDFIKVSLDETNRMMRMVSDLLSLSRIDNATSHLDIELTNFTAFITFILNRFDKIRSQNDDKKYEIIRDYPINSTW
VEIDTDKMTQVIDNIINNAIKYSPDGGKITVSMKTTETQMILSISDEGLGIPKKDLPKIFDRFYRVDKARSRAQGGSGLG
LAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLPYDKEAVKDDDWEEDGLEG

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=222978 A6J72_RS01505 WP_003072979.1 291967..293319(-) (micB) [Streptococcus intermedius strain FDAARGOS_233]
ATGATTGATAATATAAGACAATTTGTTGTATCAAAAGATTTTGTATTTGTCCTACTCATTTTAGGATTTATTTTGGTCAT
TACGTTGCTGTCCTTGGAAAATCGACGTGATAATGTTCGTATTCGCCAATTGAATCAAAAAGTGAAAGACTTAATTGCGG
GAGATTATTCAGAAGTTTTAGATATGCAAGGTGGTCCAGAAATCACTGACATTACCAATAGTATCAATGATTTATCTGAA
GTGATTCGCTTAACGCATGAAAATTTAGAACAAGAAACTAAGAGGTTATCAAGTATCTTGTCCTACATGACGGACGGTGT
CCTTGCGACCAATCGTCGTGGGCAAATTATCATGATCAATGATATGGCGACCAAGCAGTTGGGAGTCAAGGAATCTGATG
CACGAAAGATGAATATCTTAAAACTGTTGGGGATTGAAGATGAATATGATTTACGGGACTTGATTACGAAAGTTCCAGAG
CTGACCATTGATTCACAGGATGAAAATGGAGAATTTTTAAGCCTGCGTGTTCGCTTTGCCTTGATTCGTCGAGAGTCAGG
CTTTATTTCTGGGTTGGTTGCAGTGTTGCATGATACAACGGAGCAGGAAAAAGAGGAACGTGAGCGGAGACTATTTGTTT
CTAATGTCAGTCATGAATTGCGTACTCCCTTGACCAGTGTCAAGTCTTATCTGGAAGCATTAGATGAAGGCGCTTTGTCT
GAGCCGGTTGCGCCAGATTTCATCAAGGTTTCGTTAGATGAAACCAATCGGATGATGCGAATGGTTTCGGACTTACTGAG
TTTGTCGCGGATTGATAATGCGACTAGCCATTTGGATATTGAACTGACAAATTTTACAGCTTTCATCACATTTATTTTGA
ATCGTTTTGACAAGATTAGAAGTCAGAACGATGATAAAAAGTACGAAATTATCCGAGATTATCCAATTAATTCTACTTGG
GTCGAAATTGATACAGATAAAATGACACAAGTTATTGATAATATTATCAATAATGCCATTAAATATTCTCCTGATGGTGG
TAAGATTACGGTGAGTATGAAAACAACTGAGACCCAAATGATTTTATCTATATCAGATGAAGGTTTAGGAATTCCCAAAA
AAGATTTACCAAAAATTTTTGATCGATTTTATCGTGTAGACAAAGCGAGAAGTCGTGCACAAGGTGGATCGGGACTGGGC
TTGGCCATTGCTAAAGAAATTATCAAGCAGCATAACGGTTTTATCTGGGCGAAGAGTGAATATGGTAAAGGATCGACATT
TACAATCGTTCTGCCTTATGACAAAGAAGCTGTCAAAGATGATGATTGGGAAGAAGATGGATTAGAAGGATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

PAS fold (PAS)

(95-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

81.549

97.556

0.796
  vicK Streptococcus mutans UA159

71.149

90.889

0.647

Multiple sequence alignment