Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C2I05_RS08645 Genome accession   NZ_CP026039
Coordinates   1617871..1619004 (-) Length   377 a.a.
NCBI ID   WP_032727043.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK1_2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1612871..1624004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS08605 (C2I05_08585) ywnA 1613035..1613436 (-) 402 WP_120027577.1 Rrf2 family transcriptional regulator -
  C2I05_RS08610 (C2I05_08590) ureC 1613571..1615280 (-) 1710 WP_003243090.1 urease subunit alpha -
  C2I05_RS08615 (C2I05_08595) ureB 1615277..1615651 (-) 375 WP_003227726.1 urease subunit beta -
  C2I05_RS08620 (C2I05_08600) ureA 1615648..1615965 (-) 318 WP_003227724.1 urease subunit gamma -
  C2I05_RS08625 - 1616160..1616320 (-) 161 Protein_1696 hypothetical protein -
  C2I05_RS21495 - 1616542..1616766 (-) 225 Protein_1697 urea ABC transporter substrate-binding protein -
  C2I05_RS08635 (C2I05_08615) csbD 1616979..1617167 (-) 189 WP_003227718.1 stress response protein CsbD -
  C2I05_RS08640 (C2I05_08620) - 1617240..1617719 (-) 480 WP_003244390.1 hypothetical protein -
  C2I05_RS08645 (C2I05_08625) rapC 1617871..1619004 (-) 1134 WP_032727043.1 response regulator aspartate phosphatase RapB Regulator
  C2I05_RS08650 (C2I05_08630) moaA 1619197..1620222 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  C2I05_RS08655 (C2I05_08635) fdhD 1620238..1621026 (-) 789 WP_032727044.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  C2I05_RS08660 (C2I05_08640) - 1621272..1621433 (-) 162 WP_021480806.1 hypothetical protein -
  C2I05_RS08665 (C2I05_08645) ywmD 1621528..1622202 (-) 675 WP_003243553.1 VWA domain-containing protein -
  C2I05_RS08670 - 1622255..1622395 (-) 141 WP_014478246.1 hypothetical protein -
  C2I05_RS08675 (C2I05_08655) ywmC 1622526..1623209 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45056.19 Da        Isoelectric Point: 4.7546

>NTDB_id=222949 C2I05_RS08645 WP_032727043.1 1617871..1619004(-) (rapC) [Bacillus subtilis strain PK1_2]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=222949 C2I05_RS08645 WP_032727043.1 1617871..1619004(-) (rapC) [Bacillus subtilis strain PK1_2]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAAGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424