Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A6J31_RS08480 Genome accession   NZ_CP020431
Coordinates   1658259..1659620 (-) Length   453 a.a.
NCBI ID   WP_080610958.1    Uniprot ID   A0A1V0GF06
Organism   Streptococcus sp. FDAARGOS_192     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1653259..1664620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J31_RS08450 (A6J31_08385) - 1653689..1654938 (+) 1250 Protein_1438 ISL3 family transposase -
  A6J31_RS08455 (A6J31_08390) rplA 1654993..1655682 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  A6J31_RS08460 (A6J31_08395) rplK 1655782..1656207 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  A6J31_RS08465 (A6J31_08400) - 1656379..1656732 (+) 354 WP_070655743.1 DUF3397 domain-containing protein -
  A6J31_RS08470 (A6J31_08405) - 1656827..1657324 (-) 498 WP_048790870.1 beta-class carbonic anhydrase -
  A6J31_RS08475 (A6J31_08410) - 1657476..1658171 (-) 696 WP_048790869.1 TIGR00266 family protein -
  A6J31_RS08480 (A6J31_08415) radA 1658259..1659620 (-) 1362 WP_080610958.1 DNA repair protein RadA Machinery gene
  A6J31_RS08485 (A6J31_08420) - 1659617..1660084 (-) 468 WP_048790876.1 isochorismatase family cysteine hydrolase -
  A6J31_RS08490 (A6J31_08425) - 1660095..1660541 (-) 447 WP_048790867.1 dUTP diphosphatase -
  A6J31_RS08495 (A6J31_08430) - 1660750..1661352 (+) 603 WP_080610959.1 NADPH-dependent FMN reductase -
  A6J31_RS08500 (A6J31_08435) - 1661371..1662621 (+) 1251 WP_002885631.1 NAD(P)H-dependent oxidoreductase -
  A6J31_RS08505 (A6J31_08440) - 1662738..1663529 (+) 792 WP_080610961.1 formate/nitrite transporter family protein -
  A6J31_RS08510 (A6J31_08445) - 1663538..1664098 (+) 561 WP_002885657.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49477.85 Da        Isoelectric Point: 6.6528

>NTDB_id=222890 A6J31_RS08480 WP_080610958.1 1658259..1659620(-) (radA) [Streptococcus sp. FDAARGOS_192]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLERRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=222890 A6J31_RS08480 WP_080610958.1 1658259..1659620(-) (radA) [Streptococcus sp. FDAARGOS_192]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGTTGCCCCAACTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAAGTTGAGGTGCAGGAGGTGAAAAATGCTCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAATTAAAAGAAGTCTCTTCAATTAATTATGCCCGCATAAAGACTGACATGGACGAGTTTAACCGTGTT
CTAGGTGGCGGTGTGGTTCCGGGTAGCCTGGTTCTTATTGGAGGAGATCCAGGTATAGGGAAATCGACTCTCCTCTTACA
GGTGTCAACACAGTTAGCTAACAAGGGAACTGTCCTCTATGTATCTGGGGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACTAATATGCAAGCCGTTCGCAGCCAAGTAGAG
GCTATAAAACCCGATTTTCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCTGGCGTTCAAGGTTCTGT
ATCTCAGGTTCGTGAAGTCACTGCTGAACTTATGCAGATTGCCAAAACCAATAACATCGCCACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAACACATGGTGGACACGGTTCTCTATTTTGAGGGGGAACGT
CATCACACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTGCTAAATCCTAGCCAGGTTTTCTTAGAGGAACGTCTAGACGGAGCCACAGGTTCTGCCATTG
TTGTGACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACCCCAACCGTCTTTGGTAATGCTAAG
CGGACAACAACGGGACTGGATTTTAACCGCGTCAGCCTCATTATGGCTGTTTTAGAGAGACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCTTATTTAAAATCAGCTGGTGGTGTCAAATTGGACGAGCCGGCTATTGACCTTGCTGTTGCCGTTGCCA
TTGCTTCTAGTTATAAGGAGCTTCCAACCAATCCACAAGAAGCCTTTATAGGAGAAATTGGCTTGACTGGAGAGATTCGC
CGAGTAACTCGCATTGAACAGCGTATTAATGAAGCTGCTAAATTAGGCTTCACTAAGATCTATGCTCCGAAGAATTCTCT
TCATGGCATGAAAATTCCAGAAGGTATCCAGGTGGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTTTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0GF06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.521

100

0.885
  radA Streptococcus pneumoniae D39

88.521

100

0.885
  radA Streptococcus pneumoniae R6

88.521

100

0.885
  radA Streptococcus pneumoniae TIGR4

88.521

100

0.885
  radA Streptococcus mitis NCTC 12261

88.521

100

0.885
  radA Streptococcus mitis SK321

88.521

100

0.885
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611

Multiple sequence alignment