Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6J30_RS12395 Genome accession   NZ_CP020427
Coordinates   2488385..2488903 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain FDAARGOS_191     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2483385..2493903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J30_RS12385 (A6J30_11995) gshA 2486120..2487688 (+) 1569 WP_005462538.1 glutamate--cysteine ligase -
  A6J30_RS12390 (A6J30_12000) - 2487713..2488318 (+) 606 WP_005480904.1 hypothetical protein -
  A6J30_RS12395 (A6J30_12005) luxS 2488385..2488903 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  A6J30_RS12400 (A6J30_12010) - 2488964..2490244 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  A6J30_RS12405 (A6J30_12015) - 2490370..2491164 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  A6J30_RS12410 (A6J30_12020) ffh 2491377..2492759 (+) 1383 WP_005462555.1 signal recognition particle protein -
  A6J30_RS12415 (A6J30_12025) rpsP 2492969..2493217 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  A6J30_RS12420 (A6J30_12030) rimM 2493246..2493794 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=222840 A6J30_RS12395 WP_005462534.1 2488385..2488903(+) (luxS) [Vibrio parahaemolyticus strain FDAARGOS_191]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=222840 A6J30_RS12395 WP_005462534.1 2488385..2488903(+) (luxS) [Vibrio parahaemolyticus strain FDAARGOS_191]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTGAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTTGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment