Detailed information NTG0222837

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A6J30_RS12265
• Genome accession: NZ_CP020427
• Coordinates: 2465800..2466789 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain FDAARGOS_191
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2460800..2471789

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J30_RS12230 (A6J30_11840)	ftsB	2460808..2461089 (+)	282	WP_005455577.1	cell division protein FtsB	-
A6J30_RS12235 (A6J30_11845)	ispD	2461091..2461795 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
A6J30_RS12240 (A6J30_11850)	ispF	2461813..2462289 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A6J30_RS12245 (A6J30_11855)	truD	2462336..2463379 (+)	1044	WP_005478539.1	tRNA pseudouridine(13) synthase TruD	-
A6J30_RS12250 (A6J30_11860)	surE	2463379..2464155 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
A6J30_RS12255 (A6J30_11865)	-	2464155..2464781 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
A6J30_RS12260 (A6J30_11870)	-	2464796..2465719 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
A6J30_RS12265 (A6J30_11875)	rpoS	2465800..2466789 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
A6J30_RS12270 (A6J30_11880)	mutS	2466868..2469429 (-)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
A6J30_RS12275 (A6J30_11885)	pncC	2469514..2469996 (+)	483	WP_005478554.1	nicotinamide-nucleotide amidase	-
A6J30_RS12280 (A6J30_11890)	recA	2470197..2471240 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=222837 A6J30_RS12265 WP_005478537.1 2465800..2466789(+) (rpoS) [Vibrio parahaemolyticus strain FDAARGOS_191]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=222837 A6J30_RS12265 WP_005478537.1 2465800..2466789(+) (rpoS) [Vibrio parahaemolyticus strain FDAARGOS_191]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTCGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851