Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C2H97_RS12055 Genome accession   NZ_CP026038
Coordinates   2295728..2296369 (+) Length   213 a.a.
NCBI ID   WP_120027824.1    Uniprot ID   -
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2290728..2301369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS12025 (C2H97_12045) ydfE 2291919..2292542 (-) 624 WP_029725823.1 flavin reductase family protein -
  C2H97_RS12030 (C2H97_12050) ydfF 2292632..2293312 (+) 681 WP_014478969.1 winged helix-turn-helix domain-containing protein -
  C2H97_RS12035 (C2H97_12055) ydfG 2293393..2293836 (-) 444 WP_014475936.1 carboxymuconolactone decarboxylase family protein -
  C2H97_RS12040 (C2H97_12060) - 2293922..2294101 (-) 180 WP_010886421.1 hypothetical protein -
  C2H97_RS12045 (C2H97_12065) - 2294098..2294241 (-) 144 WP_014478971.1 hypothetical protein -
  C2H97_RS12050 (C2H97_12070) ydfH 2294512..2295735 (+) 1224 WP_120027823.1 two-component system sensor histidine kinase YdfH -
  C2H97_RS12055 (C2H97_12075) vraR 2295728..2296369 (+) 642 WP_120027824.1 two-component system response regulator YdfI Regulator
  C2H97_RS12060 (C2H97_12080) ydfJ 2296485..2298656 (+) 2172 WP_120027825.1 MMPL family transporter -
  C2H97_RS12065 (C2H97_12085) ydfK 2298714..2299403 (-) 690 WP_070548617.1 DUF554 domain-containing protein -
  C2H97_RS12070 (C2H97_12090) ydfL 2299493..2300305 (-) 813 WP_120027826.1 MerR family transcriptional regulator -
  C2H97_RS12075 (C2H97_12095) mneP 2300417..2301310 (-) 894 WP_120027827.1 manganese transporter MneP -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23987.95 Da        Isoelectric Point: 5.4183

>NTDB_id=222827 C2H97_RS12055 WP_120027824.1 2295728..2296369(+) (vraR) [Bacillus subtilis PY79 strain PK1_3]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGISERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=222827 C2H97_RS12055 WP_120027824.1 2295728..2296369(+) (vraR) [Bacillus subtilis PY79 strain PK1_3]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCATCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.967

99.061

0.366

Multiple sequence alignment