Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   C2H97_RS11360 Genome accession   NZ_CP026038
Coordinates   2174739..2175173 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2169739..2180173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS11330 (C2H97_11360) ydaD 2170384..2171244 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  C2H97_RS11335 (C2H97_11365) lyxE 2171260..2171763 (+) 504 WP_120027785.1 D-lyxose ketol-isomerase -
  C2H97_RS11340 (C2H97_11370) ydaF 2171850..2172401 (+) 552 WP_003234398.1 GNAT family protein -
  C2H97_RS11345 (C2H97_11375) ydaG 2172479..2172901 (+) 423 WP_014475844.1 pyridoxamine 5'-phosphate oxidase family protein -
  C2H97_RS11350 (C2H97_11380) amj 2173409..2174218 (+) 810 WP_015715258.1 lipid II flippase Amj -
  C2H97_RS11355 (C2H97_11385) ydzA 2174263..2174553 (-) 291 WP_014475846.1 DUF3817 domain-containing protein -
  C2H97_RS11360 (C2H97_11390) lrpC 2174739..2175173 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  C2H97_RS11365 (C2H97_11395) topB 2175238..2177421 (+) 2184 WP_038827751.1 DNA topoisomerase III -
  C2H97_RS11370 (C2H97_11400) epsJ 2177624..2178712 (+) 1089 WP_064671960.1 hypothetical protein -
  C2H97_RS11375 (C2H97_11405) epsK 2178693..2179544 (+) 852 WP_120027786.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=222824 C2H97_RS11360 WP_003246585.1 2174739..2175173(+) (lrpC) [Bacillus subtilis PY79 strain PK1_3]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=222824 C2H97_RS11360 WP_003246585.1 2174739..2175173(+) (lrpC) [Bacillus subtilis PY79 strain PK1_3]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAATGCGGATTACGAGCGA
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment