Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   C2H97_RS09265 Genome accession   NZ_CP026038
Coordinates   1760795..1761025 (+) Length   76 a.a.
NCBI ID   WP_120027699.1    Uniprot ID   -
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1755795..1766025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS09235 (C2H97_09255) ridA 1755959..1756336 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  C2H97_RS09240 (C2H97_09260) spoVG 1756531..1756824 (+) 294 WP_003218346.1 septation regulator SpoVG -
  C2H97_RS09245 (C2H97_09265) glmU 1757017..1758387 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  C2H97_RS09250 (C2H97_09270) prs 1758410..1759363 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  C2H97_RS09255 (C2H97_09275) ctc 1759448..1760062 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  C2H97_RS09260 (C2H97_09280) pth 1760169..1760735 (+) 567 WP_120027698.1 aminoacyl-tRNA hydrolase -
  C2H97_RS09265 (C2H97_09285) subA/fin 1760795..1761025 (+) 231 WP_120027699.1 anti-sigma-F factor Fin Machinery gene
  C2H97_RS09270 (C2H97_09290) mfd 1761095..1764628 (+) 3534 WP_120027700.1 transcription-repair coupling factor -
  C2H97_RS09275 (C2H97_09295) spoVT 1764764..1765300 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8873.84 Da        Isoelectric Point: 5.0001

>NTDB_id=222806 C2H97_RS09265 WP_120027699.1 1760795..1761025(+) (subA/fin) [Bacillus subtilis PY79 strain PK1_3]
MALYYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=222806 C2H97_RS09265 WP_120027699.1 1760795..1761025(+) (subA/fin) [Bacillus subtilis PY79 strain PK1_3]
ATGGCTTTGTATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACAA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

98.684

100

0.987