Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   C2H97_RS08200 Genome accession   NZ_CP026038
Coordinates   1571363..1572052 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1566363..1577052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS08180 (C2H97_08210) yxeA 1567268..1567615 (-) 348 WP_120027652.1 YxeA family protein -
  C2H97_RS08185 (C2H97_08215) yxdM 1567629..1569497 (-) 1869 WP_120027653.1 ABC transporter permease YxdM -
  C2H97_RS08190 (C2H97_08220) yxdL 1569472..1570245 (-) 774 WP_014115765.1 ABC transporter ATP-binding protein YxdL -
  C2H97_RS08195 (C2H97_08225) yxdK 1570389..1571366 (-) 978 WP_249847859.1 two-component system sensor histidine kinase YxdK -
  C2H97_RS08200 (C2H97_08230) braR 1571363..1572052 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  C2H97_RS08205 (C2H97_08235) iolJ 1572160..1573032 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  C2H97_RS08210 (C2H97_08240) iolI 1573053..1573889 (-) 837 WP_120027654.1 2-keto-myo-inositol isomerase -
  C2H97_RS08215 (C2H97_08245) iolH 1573975..1574844 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  C2H97_RS08220 (C2H97_08250) iolG 1574864..1575898 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=222796 C2H97_RS08200 WP_003243527.1 1571363..1572052(-) (braR) [Bacillus subtilis PY79 strain PK1_3]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=222796 C2H97_RS08200 WP_003243527.1 1571363..1572052(-) (braR) [Bacillus subtilis PY79 strain PK1_3]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCAGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTCCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATTGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAGGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406