Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   A6J95_RS01990 Genome accession   NZ_CP020424
Coordinates   397554..398507 (-) Length   317 a.a.
NCBI ID   WP_009896792.1    Uniprot ID   -
Organism   Clostridioides difficile strain FDAARGOS_267     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 392554..403507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J95_RS01975 (A6J95_01940) - 394799..395764 (-) 966 WP_009896795.1 siderophore ABC transporter substrate-binding protein -
  A6J95_RS01980 (A6J95_01945) - 395856..396611 (-) 756 WP_009889549.1 ABC transporter ATP-binding protein -
  A6J95_RS01985 (A6J95_01950) - 396608..397564 (-) 957 WP_009889548.1 iron chelate uptake ABC transporter family permease subunit -
  A6J95_RS01990 (A6J95_01955) ceuB 397554..398507 (-) 954 WP_009896792.1 ABC transporter permease Machinery gene
  A6J95_RS01995 (A6J95_01960) - 398755..399735 (-) 981 WP_009896790.1 dipeptidase -
  A6J95_RS02000 (A6J95_01965) - 399811..401013 (-) 1203 WP_009889545.1 DUF819 domain-containing protein -
  A6J95_RS02005 (A6J95_01970) - 401209..401763 (+) 555 WP_003430090.1 cupin domain-containing protein -
  A6J95_RS02010 (A6J95_01975) - 401878..402669 (-) 792 WP_009896788.1 HAD hydrolase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35112.57 Da        Isoelectric Point: 9.8181

>NTDB_id=222791 A6J95_RS01990 WP_009896792.1 397554..398507(-) (ceuB) [Clostridioides difficile strain FDAARGOS_267]
MKKRYLVIGIIILSYFSLFIGAEDINIMHIFAKNQHKLMIFIMSRIPRLISILIAGVGMSIAGLIMQQISKNKFVSPTTG
ATIDAAQFGIVICMLLVPTASIFTKTIIAFVFSLVGTFTFMKIIGKLQFKNIIFVPLVGIMFGNIIGSMTDFIAYKYDLS
QNVSSWMQGDFSMILKGNYEILYITIPLIILAYIYANKFTVVGMGMDFATNLGLSYKRIVNIGLIIVALVTVCVVVTAGN
IPFIGLIVPNIVSLYMGDNIRANIWYTGLLGAIFVLICDIFGRIIIYPYEISIGLTVGVIGSILFLYLILRRNVNEA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=222791 A6J95_RS01990 WP_009896792.1 397554..398507(-) (ceuB) [Clostridioides difficile strain FDAARGOS_267]
ATGAAGAAAAGGTATTTAGTCATAGGAATAATAATTTTGTCTTATTTTTCTTTATTTATAGGAGCTGAAGATATAAATAT
AATGCATATATTTGCCAAAAATCAGCATAAACTTATGATATTTATCATGAGTAGAATACCAAGATTAATAAGTATATTGA
TTGCTGGTGTAGGAATGAGCATAGCAGGTCTTATAATGCAACAGATAAGTAAGAATAAATTTGTATCACCTACAACAGGT
GCTACAATAGATGCAGCACAATTTGGGATAGTAATATGTATGCTTTTAGTACCAACTGCCTCTATTTTTACAAAGACAAT
AATAGCATTTGTATTTTCTCTTGTAGGGACTTTTACGTTTATGAAAATAATAGGGAAGTTACAATTTAAAAATATAATCT
TTGTACCATTAGTAGGTATAATGTTTGGAAATATAATAGGTTCTATGACGGATTTTATCGCGTATAAATACGATTTGAGT
CAAAATGTTAGTTCTTGGATGCAAGGTGACTTTTCTATGATACTTAAAGGAAATTATGAGATATTATATATCACAATACC
CCTTATAATATTAGCATATATTTATGCAAATAAATTTACTGTTGTTGGTATGGGTATGGATTTTGCGACAAACTTAGGTC
TTAGTTACAAAAGAATTGTCAATATAGGTCTGATAATAGTAGCACTTGTTACAGTATGTGTAGTCGTTACAGCTGGTAAT
ATCCCTTTTATAGGTCTAATAGTTCCAAATATCGTATCCTTGTATATGGGTGATAATATAAGAGCAAACATATGGTATAC
TGGTTTACTTGGAGCGATATTTGTACTTATATGTGATATTTTTGGAAGAATTATTATTTATCCATATGAAATATCTATAG
GGCTTACAGTTGGAGTTATAGGAAGTATACTATTCCTTTATTTAATATTAAGGAGGAATGTAAATGAAGCTTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.515

93.691

0.483

Multiple sequence alignment