Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   A6J51_RS10090 Genome accession   NZ_CP020423
Coordinates   1741506..1743251 (+) Length   581 a.a.
NCBI ID   WP_002256642.1    Uniprot ID   A0A378VNV3
Organism   Neisseria meningitidis strain FDAARGOS_212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1736506..1748251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J51_RS10065 (A6J51_09765) - 1736743..1738281 (+) 1539 WP_002232486.1 SurA N-terminal domain-containing protein -
  A6J51_RS10070 (A6J51_09770) recR 1738348..1738965 (+) 618 WP_002217147.1 recombination mediator RecR -
  A6J51_RS10075 (A6J51_09775) - 1739021..1739299 (-) 279 WP_002213502.1 hypothetical protein -
  A6J51_RS10080 (A6J51_09785) - 1739503..1740750 (+) 1248 WP_002217148.1 lipoprotein-releasing ABC transporter permease subunit -
  A6J51_RS10085 (A6J51_09790) lolD 1740743..1741438 (+) 696 WP_002217149.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  A6J51_RS10090 (A6J51_09795) recD 1741506..1743251 (+) 1746 WP_002256642.1 exodeoxyribonuclease V subunit alpha Machinery gene
  A6J51_RS10095 (A6J51_09800) - 1743279..1744382 (-) 1104 WP_080611276.1 class I SAM-dependent methyltransferase -
  A6J51_RS10110 (A6J51_09810) lon 1744633..1747083 (+) 2451 WP_002220973.1 endopeptidase La -
  A6J51_RS10115 (A6J51_09815) - 1747265..1747534 (+) 270 WP_002213508.1 HU family DNA-binding protein -
  A6J51_RS10120 (A6J51_09820) - 1747593..1748027 (-) 435 WP_002220974.1 hypothetical protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63022.57 Da        Isoelectric Point: 5.7351

>NTDB_id=222781 A6J51_RS10090 WP_002256642.1 1741506..1743251(+) (recD) [Neisseria meningitidis strain FDAARGOS_212]
MERQTDEFAQAAARAAIWFLARYAGSGDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDEPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFDHIRPLPLDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSHKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=222781 A6J51_RS10090 WP_002256642.1 1741506..1743251(+) (recD) [Neisseria meningitidis strain FDAARGOS_212]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCTGGTTTTTGGCACGCTATGCGGGTTCCGG
CGACGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGAGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCTAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTGGACGTATTG
GTTATCGATGAAGCCTCCATGTTGGATACCGCATTGATGTTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCACAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGTGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTCCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGATTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGGGAGAAGTTCGTATTCTTCGGCGGAGAAGAAACCTTCCGGCAAGCTGCC
GCCACTGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-289)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378VNV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

95.353

100

0.954

Multiple sequence alignment