Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C2H95_RS16150 Genome accession   NZ_CP026037
Coordinates   3143156..3144283 (+) Length   375 a.a.
NCBI ID   WP_249849483.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_17     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3138156..3149283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H95_RS16145 (C2H95_16080) - 3138575..3142885 (-) 4311 WP_249849482.1 ATP-binding protein -
  C2H95_RS16150 (C2H95_16085) rapC 3143156..3144283 (+) 1128 WP_249849483.1 response regulator aspartate phosphatase RapE Regulator
  C2H95_RS16155 (C2H95_16090) phrE 3144273..3144407 (+) 135 WP_014114495.1 phosphatase RapE inhibitor PhrE -
  C2H95_RS16160 (C2H95_16095) - 3144517..3144676 (+) 160 Protein_3140 hypothetical protein -
  C2H95_RS21055 (C2H95_16100) - 3145045..3147003 (+) 1959 WP_283939287.1 T7SS effector LXG polymorphic toxin -
  C2H95_RS16175 (C2H95_16105) - 3147022..3147564 (+) 543 WP_043857857.1 T6SS immunity protein Tdi1 domain-containing protein -
  C2H95_RS16180 (C2H95_16110) - 3147898..3148173 (-) 276 WP_249849484.1 barstar family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44613.43 Da        Isoelectric Point: 7.5353

>NTDB_id=222710 C2H95_RS16150 WP_249849483.1 3143156..3144283(+) (rapC) [Bacillus subtilis strain PK5_17]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDENRMELSEYL
KKIEGQKKKLDNMRAYYYNFFRGMYEFRNGEYTKAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=222710 C2H95_RS16150 WP_249849483.1 3143156..3144283(+) (rapC) [Bacillus subtilis strain PK5_17]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTTACTGA
TGCTGAAATGTTAAAAGCTGAAATAGAACGTGATATAGAGGTTATGGAGGAAGATCAAGATTTGCTTATTTATTATCAAT
TGATGGCCTTTCGCCATAAAATTATGTTGGAATACACGCTGCCATCTGATGAAAACCGAATGGAACTTTCAGAATATTTA
AAGAAAATAGAAGGACAAAAGAAAAAACTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAAGGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCAACGATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAGTTATCCGAAGTCTATTATCATATGAAAATGACTCATATCTCAATGCACTACGCTGAA
CTTTCATACAATATCTATAAAAAACATGAACTTTATTCTGTTCGGCGTATTCAGTGCCATTTTGTCATTGCCGGTAACTA
CGATGACCTTGAAAATCACGAAAAGGCTCTCCCTCACCTTCAAGAAGCTTTAAAAGGTGCCGAGTTGCTTAAAAGTAAAA
ATACTCACATCTATGCCACTGCATTTTTCAATCTCGGCAACTGCTATCACAAAATGGACAACTTAAATAAAGCTGCACGT
TATATCGAACAAGCCTTGGTTCAATACAGAAAAATAAACTCTGACGTACTTCCGCAAGCTTATCATGATCTAGCATTGAT
TTATTTTAAACAAGGCAAAAAAGAACAGGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTTTTTATGAACTTATTTGAAGCACTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTCCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)

Tetratricopeptide repeat (TPR_12)

(184-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384

Multiple sequence alignment