Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SAG_RS06390 Genome accession   NC_004116
Coordinates   715391..716200 (+) Length   269 a.a.
NCBI ID   WP_001289497.1    Uniprot ID   -
Organism   Streptococcus agalactiae 2603V/R     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 710391..721200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAG_RS06365 (SAG0716) - 710720..711415 (-) 696 WP_000173642.1 amino acid ABC transporter permease -
  SAG_RS06370 (SAG0717) - 711428..712228 (-) 801 WP_000946165.1 transporter substrate-binding domain-containing protein -
  SAG_RS06375 (SAG0718) - 712240..712995 (-) 756 WP_000053145.1 amino acid ABC transporter ATP-binding protein -
  SAG_RS06380 (SAG0719) vicR 713335..714045 (+) 711 WP_000722052.1 response regulator YycF Regulator
  SAG_RS06385 (SAG0720) vicK 714038..715387 (+) 1350 WP_001065468.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SAG_RS06390 (SAG0721) vicX 715391..716200 (+) 810 WP_001289497.1 MBL fold metallo-hydrolase Regulator
  SAG_RS06395 (SAG0722) - 716203..716571 (+) 369 WP_000719384.1 YbaN family protein -
  SAG_RS06400 (SAG0723) rnc 716747..717433 (+) 687 WP_000661526.1 ribonuclease III -
  SAG_RS06405 (SAG0724) smc 717441..720980 (+) 3540 WP_000478794.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30243.22 Da        Isoelectric Point: 6.2265

>NTDB_id=22271 SAG_RS06390 WP_001289497.1 715391..716200(+) (vicX) [Streptococcus agalactiae 2603V/R]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAG
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=22271 SAG_RS06390 WP_001289497.1 715391..716200(+) (vicX) [Streptococcus agalactiae 2603V/R]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATACTAGTTACCCATGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCCAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAGGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment