Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A6J49_RS00005 Genome accession   NZ_CP020421
Coordinates   2272946..8 (+) Length   113 a.a.
NCBI ID   WP_002221781.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_210     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2267946..5008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - pilE 2272946..8 (+) -2272937 - - Machinery gene

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12070.82 Da        Isoelectric Point: 10.2118

>NTDB_id=222647 A6J49_RS00005 WP_002221781.1 2272946..8(+) (pilE) [Neisseria meningitidis strain FDAARGOS_210]
MTGFNDAAGVASSSTIKGKYVKEVEVKNGVVTATMLSTGVNNEIKGKKLSLWAKRQAGSVKWFCGQPVTRADNAKDDVAA
ATGTDKIDTKLKKPFYPISFRTDEAGFPLLRE

Nucleotide


Download         Length: 0 bp        

>NTDB_id=222647 A6J49_RS00005 WP_002221781.1 2272946..8(+) (pilE) [Neisseria meningitidis strain FDAARGOS_210]

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(6-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

77.011

77.679

0.598
  pilE Neisseria gonorrhoeae strain FA1090

70.93

76.786

0.545

Multiple sequence alignment