Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   C2H95_RS05535 Genome accession   NZ_CP026037
Coordinates   1083672..1084106 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain PK5_17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1078672..1089106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H95_RS05505 (C2H95_05490) ydaD 1079318..1080178 (+) 861 WP_032726502.1 SDR family oxidoreductase -
  C2H95_RS05510 (C2H95_05495) lyxE 1080194..1080697 (+) 504 WP_021481729.1 D-lyxose ketol-isomerase -
  C2H95_RS05515 (C2H95_05500) ydaF 1080783..1081334 (+) 552 WP_021481728.1 GNAT family protein -
  C2H95_RS05520 (C2H95_05505) ydaG 1081412..1081834 (+) 423 WP_014475844.1 pyridoxamine 5'-phosphate oxidase family protein -
  C2H95_RS05525 (C2H95_05510) amj 1082343..1083152 (+) 810 WP_015715258.1 lipid II flippase Amj -
  C2H95_RS05530 (C2H95_05515) ydzA 1083197..1083487 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  C2H95_RS05535 (C2H95_05520) lrpC 1083672..1084106 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  C2H95_RS05540 (C2H95_05525) topB 1084171..1086354 (+) 2184 WP_169037955.1 DNA topoisomerase III -
  C2H95_RS05545 (C2H95_05530) - 1086557..1087645 (+) 1089 WP_021481724.1 hypothetical protein -
  C2H95_RS05550 (C2H95_05535) epsK 1087626..1088477 (+) 852 WP_249849603.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=222629 C2H95_RS05535 WP_003246585.1 1083672..1084106(+) (lrpC) [Bacillus subtilis strain PK5_17]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=222629 C2H95_RS05535 WP_003246585.1 1083672..1084106(+) (lrpC) [Bacillus subtilis strain PK5_17]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTAGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment