Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J48_RS06645 Genome accession   NZ_CP020420
Coordinates   1131644..1132108 (-) Length   154 a.a.
NCBI ID   WP_010981060.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_209     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1126644..1137108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J48_RS06615 (A6J48_06480) - 1126906..1127328 (-) 423 WP_002246501.1 very short patch repair endonuclease -
  A6J48_RS06620 (A6J48_06485) - 1127332..1128978 (-) 1647 WP_002237377.1 TIGR02391 family protein -
  A6J48_RS06625 (A6J48_06490) - 1128992..1130047 (-) 1056 WP_002221681.1 DNA cytosine methyltransferase -
  A6J48_RS06630 (A6J48_06495) - 1130340..1130552 (+) 213 WP_002234366.1 SWIM zinc finger domain-containing protein -
  A6J48_RS14425 (A6J48_06500) - 1130749..1131017 (+) 269 Protein_1133 5'-nucleotidase -
  A6J48_RS06640 (A6J48_06505) comP 1131107..1131556 (-) 450 WP_002237378.1 type IV pilin protein Machinery gene
  A6J48_RS06645 (A6J48_06510) comE 1131644..1132108 (-) 465 WP_010981060.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16529.75 Da        Isoelectric Point: 10.6993

>NTDB_id=222623 A6J48_RS06645 WP_010981060.1 1131644..1132108(-) (comE) [Neisseria meningitidis strain FDAARGOS_209]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=222623 A6J48_RS06645 WP_010981060.1 1131644..1132108(-) (comE) [Neisseria meningitidis strain FDAARGOS_209]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment