Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A6J48_RS03440 Genome accession   NZ_CP020420
Coordinates   573005..574384 (-) Length   459 a.a.
NCBI ID   WP_105182900.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 568005..579384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J48_RS03420 (A6J48_03335) recB 568106..571720 (+) 3615 WP_002249309.1 exodeoxyribonuclease V subunit beta Machinery gene
  A6J48_RS03425 (A6J48_03340) - 571759..572118 (+) 360 WP_002249308.1 rhodanese-like domain-containing protein -
  A6J48_RS03430 (A6J48_03345) - 572250..572729 (+) 480 WP_002246096.1 DUF302 domain-containing protein -
  A6J48_RS03440 (A6J48_03355) radA 573005..574384 (-) 1380 WP_105182900.1 DNA repair protein RadA Machinery gene
  A6J48_RS03445 (A6J48_03360) hemE 574570..575634 (-) 1065 WP_002246094.1 uroporphyrinogen decarboxylase -
  A6J48_RS03450 (A6J48_03365) - 575709..576926 (-) 1218 WP_002246093.1 heme biosynthesis protein HemY -
  A6J48_RS03455 (A6J48_03370) - 576923..578257 (-) 1335 WP_002246092.1 uroporphyrinogen-III C-methyltransferase -
  A6J48_RS03460 (A6J48_03375) - 578272..579033 (-) 762 WP_002249307.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49587.11 Da        Isoelectric Point: 7.3293

>NTDB_id=222610 A6J48_RS03440 WP_105182900.1 573005..574384(-) (radA) [Neisseria meningitidis strain FDAARGOS_209]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTAAEVPRNPTGMSELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNVKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=222610 A6J48_RS03440 WP_105182900.1 573005..574384(-) (radA) [Neisseria meningitidis strain FDAARGOS_209]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCGCCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAAGAAAGCTTAGCCGCGCCCGAGCCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAATCCCTCTCCGCCGTTACCGCTGCCGAAGTGCCGCGCAACCCGACCGGCATGAGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGCGCGGTCATCCTGCTCGGCGGCGATCCCGGCATCGGCAAATCCACGCTGTT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAGGAATCCGCCCAACAAGTCGCCC
TGCGCGCGCAGCGTTTGGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCCATTCAGACGGCC
TTGAAACAGCATCAGCCCGAAGTCGTGGTTATCGATTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCTGG
CTCCGTGTCGCAGGTGCGCGAGTGTGCAGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTTGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTGTTCGCGAT
GACGGAAAACGGTTTGAAAGGTGTGTCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGACACGCCCGGTTCGT
GCGTTTTGGTTACGCAGGAAGGCAGCCGACCGCTTTTGGTTGAAATTCAGGCATTGGTCGATGACGCGCACGGATTCACC
CCCAAACGCCTTACCGTCGGACTGGAACAAAACCGCCTCGCGATGCTGCTCGCCGTGTTAAACCGACACGGCGGCATCGC
CTGTTTCGATCAGGATGTGTTCCTCAACGCCGTCGGTGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCAGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCGCTGCCCGAAAAAACCGTGGTTTTTGGAGAAATCGGTTTGAGCGGTGAA
GTCCGCCCCGTCGCGCGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTCCCAAAAGC
CAATATGCCGCGCAACGTCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGCGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(77-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

99.129

0.497
  radA Streptococcus mitis NCTC 12261

47.672

98.257

0.468
  radA Streptococcus pneumoniae Rx1

47.45

98.257

0.466
  radA Streptococcus pneumoniae D39

47.45

98.257

0.466
  radA Streptococcus pneumoniae R6

47.45

98.257

0.466
  radA Streptococcus pneumoniae TIGR4

47.45

98.257

0.466
  radA Streptococcus mitis SK321

47.45

98.257

0.466

Multiple sequence alignment