Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SP_RS11370 Genome accession   NC_003028
Coordinates   2144824..2145921 (+) Length   365 a.a.
NCBI ID   WP_000266660.1    Uniprot ID   Q97N44
Organism   Streptococcus pneumoniae TIGR4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2139824..2150921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP_RS11345 (SP_2222) pgsA 2140345..2140890 (-) 546 WP_000712132.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SP_RS11350 (SP_2223) rodZ 2140901..2141722 (-) 822 WP_001227958.1 cytoskeleton protein RodZ -
  SP_RS11355 (SP_2224) yfmH 2141764..2143047 (-) 1284 WP_000170214.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SP_RS11360 (SP_2225) yfmF 2143044..2144294 (-) 1251 WP_000424267.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  SP_RS11365 (SP_2226) yaaA 2144453..2144821 (+) 369 WP_000455867.1 S4 domain-containing protein YaaA -
  SP_RS11370 (SP_2227) recF 2144824..2145921 (+) 1098 WP_000266660.1 DNA replication/repair protein RecF Machinery gene
  SP_RS11375 (SP_2228) guaB 2145972..2147450 (-) 1479 WP_000073428.1 IMP dehydrogenase -
  SP_RS11380 (SP_2229) trpS 2147602..2148627 (-) 1026 WP_000165444.1 tryptophan--tRNA ligase -
  SP_RS11385 (SP_2230) - 2148833..2150455 (+) 1623 WP_000958770.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41900.00 Da        Isoelectric Point: 9.0596

>NTDB_id=22260 SP_RS11370 WP_000266660.1 2144824..2145921(+) (recF) [Streptococcus pneumoniae TIGR4]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=22260 SP_RS11370 WP_000266660.1 2144824..2145921(+) (recF) [Streptococcus pneumoniae TIGR4]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGTCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97N44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

99.726

100

0.997
  recF Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.46

Multiple sequence alignment