Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C2H95_RS00820 Genome accession   NZ_CP026037
Coordinates   168159..169292 (-) Length   377 a.a.
NCBI ID   WP_032727043.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_17     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 163159..174292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H95_RS00780 (C2H95_00760) ywnA 163323..163724 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  C2H95_RS00785 (C2H95_00765) ureC 163859..165568 (-) 1710 WP_003243090.1 urease subunit alpha -
  C2H95_RS00790 (C2H95_00770) ureB 165565..165939 (-) 375 WP_125121096.1 urease subunit beta -
  C2H95_RS00795 (C2H95_00775) ureA 165936..166253 (-) 318 WP_003227724.1 urease subunit gamma -
  C2H95_RS00800 - 166449..166609 (-) 161 Protein_159 hypothetical protein -
  C2H95_RS00805 - 166842..167054 (-) 213 Protein_160 urea ABC transporter substrate-binding protein -
  C2H95_RS00810 (C2H95_00790) csbD 167267..167455 (-) 189 WP_249849547.1 stress response protein CsbD -
  C2H95_RS00815 (C2H95_00795) - 167528..168007 (-) 480 WP_003244390.1 hypothetical protein -
  C2H95_RS00820 (C2H95_00800) rapC 168159..169292 (-) 1134 WP_032727043.1 response regulator aspartate phosphatase RapB Regulator
  C2H95_RS00825 (C2H95_00805) moaA 169485..170510 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  C2H95_RS00830 (C2H95_00810) fdhD 170526..171314 (-) 789 WP_032727044.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  C2H95_RS00835 (C2H95_00815) - 171560..171721 (-) 162 WP_021480806.1 hypothetical protein -
  C2H95_RS00840 (C2H95_00820) ywmD 171816..172490 (-) 675 WP_003243553.1 VWA domain-containing protein -
  C2H95_RS00845 - 172543..172683 (-) 141 WP_014478246.1 hypothetical protein -
  C2H95_RS00850 (C2H95_00830) ywmC 172814..173497 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45056.19 Da        Isoelectric Point: 4.7546

>NTDB_id=222594 C2H95_RS00820 WP_032727043.1 168159..169292(-) (rapC) [Bacillus subtilis strain PK5_17]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=222594 C2H95_RS00820 WP_032727043.1 168159..169292(-) (rapC) [Bacillus subtilis strain PK5_17]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAAGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424