Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   C2H93_RS19270 Genome accession   NZ_CP026036
Coordinates   3766764..3766994 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain PK5_16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3761764..3771994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS19240 (C2H93_19245) ridA 3761928..3762305 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  C2H93_RS19245 (C2H93_19250) spoVG 3762500..3762793 (+) 294 WP_003218346.1 septation regulator SpoVG -
  C2H93_RS19250 (C2H93_19255) glmU 3762986..3764356 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  C2H93_RS19255 (C2H93_19260) prs 3764379..3765332 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  C2H93_RS19260 (C2H93_19265) ctc 3765417..3766031 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  C2H93_RS19265 (C2H93_19270) pth 3766138..3766704 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  C2H93_RS19270 (C2H93_19275) subA/fin 3766764..3766994 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  C2H93_RS19275 (C2H93_19280) mfd 3767064..3770597 (+) 3534 WP_153257183.1 transcription-repair coupling factor -
  C2H93_RS19280 (C2H93_19285) spoVT 3770733..3771269 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=222579 C2H93_RS19270 WP_003243417.1 3766764..3766994(+) (subA/fin) [Bacillus subtilis strain PK5_16]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=222579 C2H93_RS19270 WP_003243417.1 3766764..3766994(+) (subA/fin) [Bacillus subtilis strain PK5_16]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment