Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J46_RS04130 Genome accession   NZ_CP020419
Coordinates   684884..685279 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_207     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 678386..692811 684884..685279 within 0


Gene organization within MGE regions


Location: 678386..692811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J46_RS04085 (A6J46_13135) - 678386..679039 (+) 654 Protein_699 TIGR01621 family pseudouridine synthase -
  A6J46_RS13900 (A6J46_04095) - 684663..684779 (+) 117 Protein_700 competence protein ComE -
  A6J46_RS04130 (A6J46_04100) comE 684884..685279 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6J46_RS04135 (A6J46_04105) comP 685367..685816 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  A6J46_RS04150 (A6J46_04120) - 686726..687316 (+) 591 WP_080229150.1 DNA cytosine methyltransferase -
  A6J46_RS04155 (A6J46_04125) - 687355..687684 (+) 330 WP_002234365.1 DNA cytosine methyltransferase -
  A6J46_RS13905 - 687698..688555 (+) 858 WP_012503917.1 ATP-binding protein -
  A6J46_RS13910 - 688745..689341 (+) 597 WP_012503916.1 TIGR02391 family protein -
  A6J46_RS04165 (A6J46_04140) - 689347..689769 (+) 423 WP_003691751.1 very short patch repair endonuclease -
  A6J46_RS04175 (A6J46_04145) - 689907..691252 (+) 1346 Protein_708 replication initiation factor domain-containing protein -
  A6J46_RS04180 (A6J46_04150) - 691297..691587 (+) 291 WP_002216601.1 hypothetical protein -
  A6J46_RS04185 (A6J46_04155) - 691592..691789 (+) 198 WP_003689600.1 hypothetical protein -
  A6J46_RS04190 (A6J46_13160) - 691863..692081 (+) 219 WP_003691584.1 major capsid protein -
  A6J46_RS04195 (A6J46_04160) - 692088..692366 (+) 279 WP_003689168.1 hypothetical protein -
  A6J46_RS04200 (A6J46_04165) - 692494..692811 (+) 318 WP_003696077.1 DUF1132 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=222568 A6J46_RS04130 WP_003703428.1 684884..685279(+) (comE) [Neisseria gonorrhoeae strain FDAARGOS_207]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=222568 A6J46_RS04130 WP_003703428.1 684884..685279(+) (comE) [Neisseria gonorrhoeae strain FDAARGOS_207]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment