Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   C2H93_RS18025 Genome accession   NZ_CP026036
Coordinates   3544169..3544858 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain PK5_16     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3539169..3549858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS18005 (C2H93_18015) yxeA 3540074..3540421 (-) 348 WP_003227084.1 YxeA family protein -
  C2H93_RS18010 (C2H93_18020) yxdM 3540435..3542303 (-) 1869 WP_141949323.1 ABC transporter permease YxdM -
  C2H93_RS18015 (C2H93_18025) yxdL 3542278..3543051 (-) 774 WP_014115765.1 ABC transporter ATP-binding protein YxdL -
  C2H93_RS18020 (C2H93_18030) yxdK 3543195..3544172 (-) 978 WP_015385109.1 two-component system sensor histidine kinase YxdK -
  C2H93_RS18025 (C2H93_18035) braR 3544169..3544858 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  C2H93_RS18030 (C2H93_18040) iolJ 3544966..3545838 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  C2H93_RS18035 (C2H93_18045) iolI 3545859..3546695 (-) 837 WP_049140862.1 2-keto-myo-inositol isomerase -
  C2H93_RS18040 (C2H93_18050) iolH 3546781..3547650 (-) 870 WP_249852411.1 sugar phosphate isomerase/epimerase -
  C2H93_RS18045 (C2H93_18055) iolG 3547670..3548704 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=222568 C2H93_RS18025 WP_003243527.1 3544169..3544858(-) (braR) [Bacillus subtilis strain PK5_16]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=222568 C2H93_RS18025 WP_003243527.1 3544169..3544858(-) (braR) [Bacillus subtilis strain PK5_16]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCTGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment