Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6J44_RS07520 Genome accession   NZ_CP020418
Coordinates   1187532..1188131 (+) Length   199 a.a.
NCBI ID   WP_082295400.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_205     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1182532..1193131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J44_RS07490 (A6J44_07400) - 1182902..1183483 (-) 582 WP_003690895.1 superoxide dismutase -
  A6J44_RS07500 (A6J44_07410) dnaB 1183647..1185050 (+) 1404 WP_047917841.1 replicative DNA helicase -
  A6J44_RS15245 - 1185044..1185156 (-) 113 Protein_1223 IS5/IS1182 family transposase -
  A6J44_RS07505 (A6J44_07415) pilH 1185307..1185972 (+) 666 WP_003692819.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J44_RS07510 (A6J44_07420) pilV 1186004..1186612 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  A6J44_RS07515 (A6J44_07425) pilJ 1186609..1187553 (+) 945 WP_048339587.1 PilW family protein Machinery gene
  A6J44_RS07520 (A6J44_07430) pilK 1187532..1188131 (+) 600 WP_082295400.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J44_RS07525 (A6J44_07435) pilL 1188133..1188606 (+) 474 WP_192941311.1 PilX family type IV pilin Machinery gene
  A6J44_RS07530 (A6J44_07440) - 1188676..1188984 (-) 309 WP_010359926.1 AzlD family protein -
  A6J44_RS13825 - 1188981..1189691 (-) 711 Protein_1230 AzlC family ABC transporter permease -
  A6J44_RS07540 (A6J44_07450) dut 1189857..1190309 (+) 453 WP_003687923.1 dUTP diphosphatase -
  A6J44_RS07545 (A6J44_07455) dapC 1190381..1191568 (+) 1188 WP_082295402.1 succinyldiaminopimelate transaminase -
  A6J44_RS07550 (A6J44_07460) yaaA 1191724..1192503 (+) 780 WP_047917077.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21670.66 Da        Isoelectric Point: 8.0862

>NTDB_id=222540 A6J44_RS07520 WP_082295400.1 1187532..1188131(+) (pilK) [Neisseria gonorrhoeae strain FDAARGOS_205]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVKGKPTVEAVKRSCPANSASLCIDNKGMEYKKGTAGVSKMPRYII
EYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 600 bp        

>NTDB_id=222540 A6J44_RS07520 WP_082295400.1 1187532..1188131(+) (pilK) [Neisseria gonorrhoeae strain FDAARGOS_205]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
TATGATAGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTG
CCAGCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGGCAGGCGTCAGCAAAATGCCGCGCTATATTATC
GAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

90.148

100

0.92

Multiple sequence alignment