Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   A6J43_RS09380 Genome accession   NZ_CP020415
Coordinates   1607860..1608900 (+) Length   346 a.a.
NCBI ID   WP_003690743.1    Uniprot ID   A0AAQ1IL04
Organism   Neisseria gonorrhoeae strain FDAARGOS_204     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 1602860..1613900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J43_RS09345 (A6J43_09370) rsmA 1602965..1603744 (+) 780 WP_003690749.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  A6J43_RS09350 (A6J43_09375) - 1603759..1604328 (+) 570 WP_003687630.1 GTP pyrophosphokinase -
  A6J43_RS09355 (A6J43_09380) - 1604439..1604894 (+) 456 WP_003690747.1 hypothetical protein -
  A6J43_RS09360 (A6J43_09385) - 1604936..1605664 (+) 729 WP_047923992.1 amino acid ABC transporter ATP-binding protein -
  A6J43_RS09365 (A6J43_09390) - 1605737..1606096 (+) 360 WP_003687624.1 hypothetical protein -
  A6J43_RS09370 (A6J43_09395) - 1606101..1606541 (+) 441 WP_003687622.1 protein YgfX -
  A6J43_RS09375 (A6J43_09400) folC 1606572..1607846 (+) 1275 WP_003687619.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  A6J43_RS09380 (A6J43_09405) tpc 1607860..1608900 (+) 1041 WP_003690743.1 cell division protein FtsN Machinery gene
  A6J43_RS09385 (A6J43_09410) - 1608893..1609390 (+) 498 WP_003687616.1 CvpA family protein -
  A6J43_RS09390 (A6J43_09415) purF 1609584..1611134 (+) 1551 WP_003698100.1 amidophosphoribosyltransferase -
  A6J43_RS09395 (A6J43_09420) greB 1611234..1611725 (+) 492 WP_003687613.1 transcription elongation factor GreB -
  A6J43_RS09400 (A6J43_09425) - 1611784..1612410 (+) 627 WP_003698099.1 phosphoribosylanthranilate isomerase -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 37006.18 Da        Isoelectric Point: 9.8118

>NTDB_id=222494 A6J43_RS09380 WP_003690743.1 1607860..1608900(+) (tpc) [Neisseria gonorrhoeae strain FDAARGOS_204]
MSENKQNEVLTGYEQLKRRNRRRLVTASSLVAASCILLAAALSSDPADSNPAPQAGETGATESQTANTAQTPALKSAAEN
GETAADKPQDLAGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEESEKLQQAETAKTEPKQAKQRAAEKVSATA
DSTDTVAVEKPKRTAEPKPQKAERTAEAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAEGKKTAEK
DRSDGKKHETAQKTDKADKTKTAEKEKSGKAGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSN
YKNARDAERDLNKLRVHGIAGQVTNE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=222494 A6J43_RS09380 WP_003690743.1 1607860..1608900(+) (tpc) [Neisseria gonorrhoeae strain FDAARGOS_204]
ATGTCCGAAAACAAACAAAACGAAGTCCTGACCGGTTACGAACAGCTGAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGCTCCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCACTCAGTTCCGATCCTGCCGACAGCAATCCCGCACCGC
AGGCCGGCGAAACCGGCGCAACGGAAAGCCAAACGGCAAACACGGCACAAACCCCTGCCTTGAAATCCGCCGCCGAAAAC
GGGGAAACCGCCGCCGACAAACCGCAGGACTTGGCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCC
TGAAAACGTAGGCGCGCCGCTGGTGCTGATTAACGACCGGCTCGAAGACAGCAACATCAAAGGTTTGGAAGAATCCGAGA
AACTGCAACAGGCAGAAACCGCCAAAACCGAACCGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGTCGGCAACTGCC
GACAGTACGGATACGGTAGCGGTTGAAAAACCGAAACGCACTGCCGAACCCAAACCGCAAAAAGCGGAACGCACTGCCGA
AGCCAAGCCCAAAGCCAAAGAAACCAAAACCGCCGAAAAAGTTGCCGACAAACCGAAAACTGCTGCCGAAAAAACCAAAC
CGGATACGGCAAAATCCGACAGCGCGGTAAAAGAAGCGAAAAAAGCCGACAAGGCTGAAGGCAAAAAGACAGCCGAAAAA
GACCGTTCGGACGGCAAAAAACACGAAACGGCGCAAAAAACCGACAAAGCGGACAAAACCAAAACCGCCGAGAAGGAAAA
ATCCGGCAAGGCGGGCAAAAAAGCCGCCATTCAGGCAGGTTATGCCGAAAAAGAACGCGCCTTGAGCCTCCAGCGCAAAA
TGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATCATGACCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAAC
TATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAACTGCGCGTGCACGGCATCGCCGGCCAGGTAACGAATGAATA
G

Domains


Predicted by InterproScan.

(272-344)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

99.711

100

0.997


Multiple sequence alignment