Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C2H93_RS04960 Genome accession   NZ_CP026036
Coordinates   963924..965060 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 958924..970060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS04940 (C2H93_04960) uxaA 959372..960865 (+) 1494 WP_249852645.1 altronate dehydratase family protein -
  C2H93_RS04945 (C2H93_04965) yjnA 960906..961670 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  C2H93_RS04950 (C2H93_04970) yjoA 961896..962360 (-) 465 WP_014479541.1 DinB family protein -
  C2H93_RS04955 (C2H93_04975) yjoB 962509..963779 (+) 1271 Protein_956 ATPase YjoB -
  C2H93_RS04960 (C2H93_04980) rapC 963924..965060 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  C2H93_RS04965 (C2H93_04985) phrA 965050..965184 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  C2H93_RS04970 (C2H93_04990) yjpA 965215..965471 (-) 257 Protein_959 YciI family protein -
  C2H93_RS04975 (C2H93_04995) xlyB 965592..966545 (+) 954 WP_032677396.1 N-acetylmuramoyl-L-alanine amidase -
  C2H93_RS04980 (C2H93_05000) yjqA 966585..966962 (-) 378 WP_014479546.1 PH domain-containing protein -
  C2H93_RS04985 (C2H93_05005) pghB 967067..967669 (+) 603 WP_161619677.1 poly-gamma-glutamate hydrolase family protein -
  C2H93_RS04990 (C2H93_05010) xpdC 967746..968582 (+) 837 WP_003245071.1 manganese catalase family protein -
  C2H93_RS04995 (C2H93_05015) xkdA 968626..969222 (-) 597 WP_249852646.1 ImmA/IrrE family metallo-endopeptidase -
  C2H93_RS05000 (C2H93_05020) xre 969385..969726 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=222477 C2H93_RS04960 WP_015252291.1 963924..965060(+) (rapC) [Bacillus subtilis strain PK5_16]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=222477 C2H93_RS04960 WP_015252291.1 963924..965060(+) (rapC) [Bacillus subtilis strain PK5_16]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTACTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTATAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATAGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418