Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   A6J40_RS12465 Genome accession   NZ_CP020412
Coordinates   2834277..2834966 (+) Length   229 a.a.
NCBI ID   WP_003634235.1    Uniprot ID   D3HMN1
Organism   Legionella longbeachae strain FDAARGOS_201     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2829277..2839966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J40_RS12450 (A6J40_12440) - 2830504..2832981 (+) 2478 WP_003634229.1 hypothetical protein -
  A6J40_RS12455 (A6J40_12445) dapB 2833020..2833751 (-) 732 WP_003634231.1 4-hydroxy-tetrahydrodipicolinate reductase -
  A6J40_RS12460 (A6J40_12450) - 2833770..2833985 (-) 216 WP_003634232.1 hypothetical protein -
  A6J40_RS12465 (A6J40_12455) rocC 2834277..2834966 (+) 690 WP_003634235.1 ProQ/FinO family protein Regulator
  A6J40_RS12470 (A6J40_12460) - 2835158..2836276 (-) 1119 WP_003634237.1 hypothetical protein -
  A6J40_RS12475 (A6J40_12465) - 2836397..2837065 (-) 669 WP_003634238.1 hypothetical protein -
  A6J40_RS12485 (A6J40_12475) pyk 2837798..2839216 (-) 1419 WP_003634240.1 pyruvate kinase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25675.36 Da        Isoelectric Point: 10.4497

>NTDB_id=222451 A6J40_RS12465 WP_003634235.1 2834277..2834966(+) (rocC) [Legionella longbeachae strain FDAARGOS_201]
MRKQELHPRTAVINKAQKNKSKKARTDALLWLAANFPAAFDNSLRIRPLKIGIMDDILLHAEKAAEVGISKSKLREAVVL
FTRRLDYLACLKLREMRIDLQGNDVGEVSSEEAEYAAAKIKKRVEKSARNARKALADKTANPSNPNPQGMSYHSKIMNQS
SNTTDDNFPVYPTRSTYNALNATTQPVRTTAVVVKHKSAKQYDPDAVARLKEKLGLSRNSEEKKETVEE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=222451 A6J40_RS12465 WP_003634235.1 2834277..2834966(+) (rocC) [Legionella longbeachae strain FDAARGOS_201]
ATGAGAAAACAGGAGCTGCACCCACGCACCGCTGTTATTAATAAAGCTCAAAAAAATAAGTCTAAAAAAGCACGGACAGA
TGCTTTATTATGGCTTGCTGCAAATTTTCCTGCAGCATTTGATAATTCACTACGAATTCGCCCATTAAAAATTGGTATTA
TGGATGATATTTTACTTCATGCAGAAAAAGCTGCGGAAGTTGGTATTTCCAAAAGCAAATTGAGAGAAGCAGTGGTGTTA
TTTACGCGCCGTCTAGATTATTTGGCCTGTCTTAAGCTTCGAGAAATGCGAATTGATTTGCAAGGTAATGACGTTGGTGA
AGTGAGTTCAGAGGAAGCTGAATATGCGGCTGCCAAGATTAAAAAGCGTGTTGAGAAAAGTGCTCGTAACGCGCGTAAAG
CGCTTGCAGACAAAACAGCTAATCCTTCTAATCCAAATCCTCAAGGCATGAGCTACCACTCAAAAATAATGAATCAATCA
TCAAACACAACGGATGATAATTTTCCTGTTTATCCCACACGATCTACCTATAATGCCCTAAATGCAACGACACAACCGGT
TAGAACTACTGCTGTAGTGGTAAAGCATAAGTCAGCAAAACAATATGATCCTGATGCTGTAGCTCGTTTGAAAGAGAAAT
TGGGATTGTCCCGAAATTCCGAAGAAAAAAAAGAAACTGTTGAAGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(27-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HMN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

70

100

0.703

Multiple sequence alignment