Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   C2H96_RS20990 Genome accession   NZ_CP026035
Coordinates   4063590..4065080 (+) Length   496 a.a.
NCBI ID   WP_120028326.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4058590..4070080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS20970 (C2H96_20915) serA 4059341..4060918 (-) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -
  C2H96_RS20975 (C2H96_20920) fmnP 4061415..4061987 (+) 573 WP_004399159.1 riboflavin transporter FmnP -
  C2H96_RS20980 (C2H96_20925) fer 4062025..4062273 (-) 249 WP_003225461.1 ferredoxin -
  C2H96_RS20985 (C2H96_20930) gmmB 4062539..4063597 (+) 1059 WP_120028327.1 helix-turn-helix domain-containing protein -
  C2H96_RS20990 (C2H96_20935) recS 4063590..4065080 (+) 1491 WP_120028326.1 ATP-dependent DNA helicase RecQ Machinery gene
  C2H96_RS20995 (C2H96_20940) ypbD 4065107..4065709 (+) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  C2H96_RS21000 (C2H96_20945) ypbE 4065660..4066391 (+) 732 WP_038429216.1 LysM peptidoglycan-binding domain-containing protein -
  C2H96_RS21005 (C2H96_20950) ypbF 4066454..4066897 (+) 444 WP_029317972.1 YpbF family protein -
  C2H96_RS21010 (C2H96_20955) ypbG 4066995..4067774 (+) 780 WP_249848146.1 metallophosphoesterase -
  C2H96_RS21015 (C2H96_20960) mecB 4067933..4068517 (+) 585 WP_003230533.1 genetic competence negative regulator -
  C2H96_RS21020 (C2H96_20965) gudB 4068673..4069947 (+) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56507.01 Da        Isoelectric Point: 6.4518

>NTDB_id=222436 C2H96_RS20990 WP_120028326.1 4063590..4065080(+) (recS) [Bacillus subtilis strain PK5_68]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGTVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMVPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=222436 C2H96_RS20990 WP_120028326.1 4063590..4065080(+) (recS) [Bacillus subtilis strain PK5_68]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCACGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATTAGCCTATTTG
TTATCGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGCCCGGGAATTGTTTATTGTCCAACACGGAAATGG
GCTGAGGAATTAGCGGGTGAGATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTAATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAAATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCCGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGTGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-180)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994

Multiple sequence alignment