Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   A6J40_RS03815 Genome accession   NZ_CP020412
Coordinates   821900..822235 (-) Length   111 a.a.
NCBI ID   WP_012979073.1    Uniprot ID   -
Organism   Legionella longbeachae strain FDAARGOS_201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 816900..827235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J40_RS03800 (A6J40_03780) - 817884..819212 (-) 1329 WP_396426618.1 MFS transporter -
  A6J40_RS03805 (A6J40_03785) - 819940..821037 (-) 1098 WP_012979074.1 anhydro-N-acetylmuramic acid kinase -
  A6J40_RS03810 (A6J40_03790) - 821037..821822 (-) 786 WP_003631738.1 TatD family hydrolase -
  A6J40_RS03815 (A6J40_03795) pilZ 821900..822235 (-) 336 WP_012979073.1 PilZ domain-containing protein Machinery gene
  A6J40_RS03820 (A6J40_03800) - 822290..823204 (-) 915 WP_012979072.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  A6J40_RS03825 (A6J40_03805) tmk 823201..823839 (-) 639 WP_003631741.1 dTMP kinase -
  A6J40_RS03830 (A6J40_03810) mltG 823841..824839 (-) 999 WP_012979071.1 endolytic transglycosylase MltG -
  A6J40_RS03835 (A6J40_03815) fabF 824840..826078 (-) 1239 WP_012979070.1 beta-ketoacyl-ACP synthase II -
  A6J40_RS03840 (A6J40_03820) acpP 826333..826581 (-) 249 WP_003631752.1 acyl carrier protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12245.02 Da        Isoelectric Point: 6.2110

>NTDB_id=222425 A6J40_RS03815 WP_012979073.1 821900..822235(-) (pilZ) [Legionella longbeachae strain FDAARGOS_201]
MDKHQINCIFPNESALYAAYMPFVKHGGIFIRTNHKFEFGAIVSLSIKLMEEDESYEVGGKVVWITPQGAQGNKIPGIGV
QFVGENSSNLCNKIETYLAGMLKSSQTTDTI

Nucleotide


Download         Length: 336 bp        

>NTDB_id=222425 A6J40_RS03815 WP_012979073.1 821900..822235(-) (pilZ) [Legionella longbeachae strain FDAARGOS_201]
ATGGATAAACATCAGATCAACTGTATATTTCCTAATGAATCAGCGCTGTATGCAGCTTATATGCCCTTTGTTAAACATGG
TGGAATATTTATTCGCACGAACCACAAGTTTGAGTTTGGTGCAATAGTGAGCTTATCTATAAAACTAATGGAAGAGGATG
AGTCATACGAAGTCGGTGGAAAAGTGGTATGGATTACACCTCAAGGTGCTCAAGGTAATAAGATTCCTGGAATAGGGGTA
CAGTTTGTAGGAGAAAATAGCAGTAATTTGTGCAATAAAATAGAGACCTATTTAGCAGGCATGTTAAAATCATCCCAGAC
AACAGATACAATTTAG

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(12-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

69.811

95.495

0.667
  pilZ Legionella pneumophila strain ERS1305867

69.811

95.495

0.667

Multiple sequence alignment