Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   TLL_RS11895 Genome accession   NC_004113
Coordinates   2438335..2439414 (+) Length   359 a.a.
NCBI ID   WP_164921030.1    Uniprot ID   -
Organism   Thermosynechococcus vestitus BP-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2433335..2444414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TLL_RS11880 (tlr2338) - 2434417..2434929 (+) 513 WP_011058171.1 adenine phosphoribosyltransferase -
  TLL_RS11885 (tll2339) comA 2434990..2436687 (-) 1698 WP_011058172.1 DUF655 domain-containing protein Machinery gene
  TLL_RS11890 (tlr2340) - 2436807..2438054 (+) 1248 WP_011058173.1 acetate/propionate family kinase -
  TLL_RS11895 (tlr2341) pilM 2438335..2439414 (+) 1080 WP_164921030.1 type IV pilus biogenesis protein PilM Machinery gene
  TLL_RS11900 (tlr2342) - 2439426..2440127 (+) 702 WP_011058175.1 PilN domain-containing protein -
  TLL_RS11905 (tlr2343) - 2440124..2440861 (+) 738 WP_011058176.1 type 4a pilus biogenesis protein PilO -
  TLL_RS11910 (tlr2344) - 2440956..2443115 (+) 2160 WP_011058177.1 AMIN domain-containing protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39187.15 Da        Isoelectric Point: 4.2866

>NTDB_id=22242 TLL_RS11895 WP_164921030.1 2438335..2439414(+) (pilM) [Thermosynechococcus vestitus BP-1]
MLGNLFAKPKQGLGIELTPERVNIVQIQRQKQGLKMTAMASVPLAEGAIEEGRIIDTTAVADAIRQGIEDKRIKQKEVIS
AIPMNEAVIRLIRLPAELPDYELREVVLMQEAPLYLPFPREEADVDYQKLGTSVDEDGIERVEILLVGTPREVTDAYVNA
FTQAGLQLTALEVTNFALMRTLRDSLQQFVGEAAAIIDIGDEGTEISIVKDGIPQFNRKVPIGKERMQEAISRAMNLPPS
MGVDLIENLTVPLEPMDVTGALNPSGAAILRVLSDLADEIRRSIDFYLNQGESLEVSQLLLAGPGASLGQVDEFFSQRLN
YATTLVDPISLLGLQTPEEIPLEKRPALGTVIGLGLRGA

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=22242 TLL_RS11895 WP_164921030.1 2438335..2439414(+) (pilM) [Thermosynechococcus vestitus BP-1]
GTGCTGGGAAACCTATTTGCAAAACCAAAGCAAGGCTTGGGGATTGAACTCACCCCAGAGCGGGTCAATATCGTACAGAT
TCAGCGACAAAAGCAGGGCCTGAAAATGACGGCCATGGCCTCCGTACCCTTGGCTGAAGGCGCCATTGAAGAAGGCCGCA
TCATTGACACCACCGCCGTTGCCGATGCCATCCGTCAAGGGATTGAGGATAAGCGCATTAAACAAAAAGAGGTGATCAGT
GCCATTCCCATGAATGAAGCCGTGATTCGCCTGATTCGCCTGCCTGCTGAACTACCGGACTACGAATTGCGGGAAGTGGT
TCTCATGCAGGAAGCCCCCCTCTACCTTCCCTTTCCCCGCGAAGAAGCCGACGTCGATTATCAAAAGCTGGGAACCTCCG
TTGATGAGGATGGCATTGAGCGAGTGGAAATCCTGCTGGTGGGTACCCCCCGCGAGGTAACCGACGCCTACGTCAATGCC
TTTACCCAAGCTGGTTTACAACTGACCGCCCTTGAAGTCACTAACTTTGCCCTCATGCGTACGCTGCGGGATTCGCTACA
GCAGTTTGTGGGGGAAGCAGCAGCAATTATTGATATTGGCGATGAAGGCACAGAAATTAGCATCGTCAAGGATGGCATTC
CCCAGTTCAACCGCAAAGTGCCCATTGGTAAAGAACGGATGCAAGAAGCGATTAGCCGCGCCATGAACTTGCCGCCTTCG
ATGGGCGTTGACCTCATTGAGAATCTGACTGTTCCCCTAGAGCCAATGGATGTAACGGGGGCACTCAACCCCAGTGGTGC
CGCTATTTTGCGCGTGCTCTCCGATCTCGCGGATGAAATCCGCCGTTCCATTGACTTTTACCTGAACCAGGGGGAGAGTT
TAGAGGTCTCACAGTTGCTGCTTGCAGGTCCGGGTGCTAGTCTTGGTCAAGTGGATGAGTTTTTTAGTCAGCGGCTCAAC
TATGCCACCACGTTAGTTGACCCCATTAGTTTGCTGGGACTGCAAACCCCTGAAGAGATTCCCCTCGAAAAACGCCCTGC
CCTCGGCACGGTGATTGGTCTTGGTCTGCGTGGCGCTTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

50.139

100

0.504

Multiple sequence alignment