Detailed information NTG0222417

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A6J38_RS08745
• Genome accession: NZ_CP020411
• Coordinates: 1758081..1758773 (+)
• Length: 230 a.a.
• NCBI ID: WP_005694370.1
• Uniprot ID: -
• Organism: Haemophilus influenzae strain FDAARGOS_199
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1753081..1763773

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J38_RS08725 (A6J38_08730)	ampD	1754357..1754911 (-)	555	WP_005694366.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
A6J38_RS08730 (A6J38_08735)	pilA	1755027..1755476 (+)	450	WP_005694367.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
A6J38_RS08735 (A6J38_08740)	pilB	1755473..1756867 (+)	1395	WP_005694368.1	GspE/PulE family protein	Machinery gene
A6J38_RS08740 (A6J38_08745)	pilC	1756864..1758084 (+)	1221	WP_005694369.1	type II secretion system F family protein	Machinery gene
A6J38_RS08745 (A6J38_08750)	pilD	1758081..1758773 (+)	693	WP_005694370.1	A24 family peptidase	Machinery gene
A6J38_RS08750 (A6J38_08755)	rho	1758827..1760089 (-)	1263	WP_005648966.1	transcription termination factor Rho	-
A6J38_RS08755 (A6J38_08760)	metJ	1760336..1760653 (+)	318	WP_005631186.1	met regulon transcriptional regulator MetJ	-
A6J38_RS08760 (A6J38_08765)	cueR	1760667..1761053 (-)	387	WP_005654127.1	Cu(I)-responsive transcriptional regulator	-
A6J38_RS08765 (A6J38_08770)	-	1761130..1761336 (+)	207	WP_005631184.1	heavy-metal-associated domain-containing protein	-
A6J38_RS08770 (A6J38_08775)	-	1761411..1761617 (+)	207	WP_005656255.1	heavy-metal-associated domain-containing protein	-
A6J38_RS08775 (A6J38_08780)	-	1761691..1761897 (+)	207	WP_005656255.1	heavy-metal-associated domain-containing protein	-
A6J38_RS08780 (A6J38_08785)	-	1761972..1762178 (+)	207	WP_005656255.1	heavy-metal-associated domain-containing protein	-
A6J38_RS08785 (A6J38_08790)	-	1762253..1762459 (+)	207	WP_005656255.1	heavy-metal-associated domain-containing protein	-
A6J38_RS08790 (A6J38_08795)	-	1762533..1762739 (+)	207	WP_005656255.1	heavy-metal-associated domain-containing protein	-

Sequence

Protein

• Length: 230 a.a.
• Molecular weight: 26788.82 Da
• Isoelectric Point: 9.2892

>NTDB_id=222417 A6J38_RS08745 WP_005694370.1 1758081..1758773(+) (pilD) [Haemophilus influenzae strain FDAARGOS_199]
MIYFTMFLLGGILGIALWFYLSGFITRLQQNIYAIYVELFPQNRSPFQPHFASIQQKKCGHILRYFFSIGVGFIFLQIAF
KDSIFTVWIGLTLIILWTISYLDWHYQLISTTPCLWLLTLGLFGADNNFSLLTLSESIKSAASFFIVFYVIYWLAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHRKKKEFLPFAPFMNLSAVIIYFVKYYGY

Nucleotide

• Length: 693 bp

>NTDB_id=222417 A6J38_RS08745 WP_005694370.1 1758081..1758773(+) (pilD) [Haemophilus influenzae strain FDAARGOS_199]
ATGATTTATTTCACAATGTTTTTATTAGGCGGTATCTTAGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACGCG
TTTGCAGCAAAATATTTATGCGATTTACGTTGAATTATTTCCACAAAACCGTTCTCCATTTCAACCGCACTTTGCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTTAGTATTGGGGTTGGATTTATATTTTTACAAATTGCCTTC
AAAGATTCTATTTTTACTGTATGGATCGGACTCACACTTATTATTCTTTGGACAATCAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACGACACCCTGTTTATGGTTACTTACTCTAGGATTATTTGGAGCAGACAATAACTTTTCATTACTTACGT
TATCTGAAAGCATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGTAATCTATTGGCTTGCAAAATTCTATTATGGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCACTT
TTTATTATTAGCCTCAGTGCTTGGAATATGTTTTTCGCTTATTCATAGGAAGAAAAAAGAATTTTTACCTTTTGCCCCTT
TTATGAACTTATCAGCTGTCATCATTTATTTCGTCAAATATTACGGATATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (92-199)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Haemophilus influenzae Rd KW20	100	100	1
pilD	Haemophilus influenzae 86-028NP	94.783	100	0.948