Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C2H96_RS16315 Genome accession   NZ_CP026035
Coordinates   3208471..3209115 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   G4P056
Organism   Bacillus subtilis strain PK5_68     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3203471..3214115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS16285 (C2H96_16230) - 3203886..3204254 (-) 369 WP_038828672.1 hypothetical protein -
  C2H96_RS16290 - 3204369..3204494 (-) 126 WP_120028613.1 hypothetical protein -
  C2H96_RS16295 (C2H96_16235) degQ 3204716..3204856 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  C2H96_RS16300 (C2H96_16240) comQ 3205041..3205901 (+) 861 WP_064671628.1 polyprenyl synthetase family protein Regulator
  C2H96_RS16305 (C2H96_16245) comX 3205914..3206078 (+) 165 WP_015384519.1 competence pheromone ComX -
  C2H96_RS16310 (C2H96_16250) comP 3206090..3208390 (+) 2301 WP_120028527.1 histidine kinase Regulator
  C2H96_RS16315 (C2H96_16255) comA 3208471..3209115 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  C2H96_RS16320 (C2H96_16260) yuxO 3209134..3209514 (+) 381 WP_014477831.1 hotdog fold thioesterase -
  C2H96_RS16325 (C2H96_16265) mnhG 3209553..3209927 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  C2H96_RS16330 (C2H96_16270) mrpF 3209911..3210195 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  C2H96_RS16335 (C2H96_16275) mrpE 3210195..3210671 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  C2H96_RS16340 (C2H96_16280) mrpD 3210677..3212158 (-) 1482 WP_124072774.1 Na+/H+ antiporter subunit D -
  C2H96_RS16345 (C2H96_16285) mrpC 3212151..3212492 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  C2H96_RS16350 (C2H96_16290) mrpB 3212492..3212923 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=222398 C2H96_RS16315 WP_003220716.1 3208471..3209115(+) (comA) [Bacillus subtilis strain PK5_68]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=222398 C2H96_RS16315 WP_003220716.1 3208471..3209115(+) (comA) [Bacillus subtilis strain PK5_68]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P056

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1