Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   A6J38_RS05325 Genome accession   NZ_CP020411
Coordinates   1090643..1091359 (-) Length   238 a.a.
NCBI ID   WP_005693287.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_199     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1085643..1096359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J38_RS05305 (A6J38_05300) nrdR 1085765..1086214 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  A6J38_RS05310 (A6J38_05305) recC 1086269..1089634 (-) 3366 WP_005693290.1 exodeoxyribonuclease V subunit gamma -
  A6J38_RS05315 (A6J38_05310) comQ 1089680..1089967 (-) 288 WP_032828334.1 DUF5374 domain-containing protein Machinery gene
  A6J38_RS05320 (A6J38_05315) comP 1089960..1090643 (-) 684 WP_010869091.1 DUF2572 family protein Machinery gene
  A6J38_RS05325 (A6J38_05320) comO 1090643..1091359 (-) 717 WP_005693287.1 type II secretion system protein J Machinery gene
  A6J38_RS05330 (A6J38_05325) comN 1091359..1091871 (-) 513 WP_005693285.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J38_RS05335 (A6J38_05330) suhB 1092071..1092874 (+) 804 WP_005693284.1 inositol-1-monophosphatase -
  A6J38_RS05340 (A6J38_05335) nrfE 1092983..1094890 (+) 1908 WP_005693283.1 heme lyase NrfEFG subunit NrfE -
  A6J38_RS05345 (A6J38_05340) - 1094890..1095420 (+) 531 WP_005693282.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26787.17 Da        Isoelectric Point: 9.5508

>NTDB_id=222394 A6J38_RS05325 WP_005693287.1 1090643..1091359(-) (comO) [Haemophilus influenzae strain FDAARGOS_199]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVVLWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=222394 A6J38_RS05325 WP_005693287.1 1090643..1091359(-) (comO) [Haemophilus influenzae strain FDAARGOS_199]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACTAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGTGCTCTGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

100

100

1

Multiple sequence alignment