Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C2H96_RS13720 Genome accession   NZ_CP026035
Coordinates   2680072..2681205 (+) Length   377 a.a.
NCBI ID   WP_032727043.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2675072..2686205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS13690 (C2H96_13620) ywmC 2675867..2676550 (+) 684 WP_003227700.1 VWA domain-containing protein -
  C2H96_RS13695 - 2676681..2676821 (+) 141 WP_014478246.1 hypothetical protein -
  C2H96_RS13700 (C2H96_13630) ywmD 2676874..2677548 (+) 675 WP_003243553.1 VWA domain-containing protein -
  C2H96_RS13705 (C2H96_13635) - 2677643..2677804 (+) 162 WP_021480806.1 hypothetical protein -
  C2H96_RS13710 (C2H96_13640) fdhD 2678050..2678838 (+) 789 WP_032727044.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  C2H96_RS13715 (C2H96_13645) moaA 2678854..2679879 (+) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  C2H96_RS13720 (C2H96_13650) rapC 2680072..2681205 (+) 1134 WP_032727043.1 response regulator aspartate phosphatase RapB Regulator
  C2H96_RS13725 (C2H96_13655) - 2681357..2681836 (+) 480 WP_003244390.1 hypothetical protein -
  C2H96_RS13730 (C2H96_13660) csbD 2681909..2682097 (+) 189 WP_003227718.1 stress response protein CsbD -
  C2H96_RS21545 - 2682310..2682534 (+) 225 Protein_2654 urea ABC transporter substrate-binding protein -
  C2H96_RS13740 - 2682756..2682916 (+) 161 Protein_2655 hypothetical protein -
  C2H96_RS13745 (C2H96_13675) ureA 2683111..2683428 (+) 318 WP_003227724.1 urease subunit gamma -
  C2H96_RS13750 (C2H96_13680) ureB 2683425..2683799 (+) 375 WP_003227726.1 urease subunit beta -
  C2H96_RS13755 (C2H96_13685) ureC 2683796..2685505 (+) 1710 WP_003243090.1 urease subunit alpha -
  C2H96_RS13760 (C2H96_13690) ywnA 2685640..2686041 (+) 402 WP_120027577.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45056.19 Da        Isoelectric Point: 4.7546

>NTDB_id=222381 C2H96_RS13720 WP_032727043.1 2680072..2681205(+) (rapC) [Bacillus subtilis strain PK5_68]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=222381 C2H96_RS13720 WP_032727043.1 2680072..2681205(+) (rapC) [Bacillus subtilis strain PK5_68]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAAGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424