Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   C2H96_RS12155 Genome accession   NZ_CP026035
Coordinates   2376289..2376978 (+) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain PK5_68     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2371289..2381978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS12135 (C2H96_12055) iolG 2372443..2373477 (+) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -
  C2H96_RS12140 (C2H96_12060) iolH 2373497..2374366 (+) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  C2H96_RS12145 (C2H96_12065) iolI 2374452..2375288 (+) 837 WP_120027654.1 2-keto-myo-inositol isomerase -
  C2H96_RS12150 (C2H96_12070) iolJ 2375309..2376181 (+) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  C2H96_RS12155 (C2H96_12075) braR 2376289..2376978 (+) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  C2H96_RS12160 (C2H96_12080) yxdK 2376975..2377952 (+) 978 WP_249847859.1 two-component system sensor histidine kinase YxdK -
  C2H96_RS12165 (C2H96_12085) yxdL 2378096..2378869 (+) 774 WP_014115765.1 ABC transporter ATP-binding protein YxdL -
  C2H96_RS12170 (C2H96_12090) yxdM 2378844..2380712 (+) 1869 WP_120027653.1 ABC transporter permease YxdM -
  C2H96_RS12175 (C2H96_12095) yxeA 2380726..2381073 (+) 348 WP_120027652.1 YxeA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=222375 C2H96_RS12155 WP_003243527.1 2376289..2376978(+) (braR) [Bacillus subtilis strain PK5_68]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=222375 C2H96_RS12155 WP_003243527.1 2376289..2376978(+) (braR) [Bacillus subtilis strain PK5_68]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCAGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTCCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATTGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAGGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406