Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   C2H96_RS11090 Genome accession   NZ_CP026035
Coordinates   2187316..2187546 (-) Length   76 a.a.
NCBI ID   WP_120027699.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2182316..2192546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS11080 (C2H96_11015) spoVT 2183041..2183577 (-) 537 WP_003218365.1 stage V sporulation protein T -
  C2H96_RS11085 (C2H96_11020) mfd 2183713..2187246 (-) 3534 WP_120027700.1 transcription-repair coupling factor -
  C2H96_RS11090 (C2H96_11025) subA/fin 2187316..2187546 (-) 231 WP_120027699.1 anti-sigma-F factor Fin Machinery gene
  C2H96_RS11095 (C2H96_11030) pth 2187606..2188172 (-) 567 WP_120027698.1 aminoacyl-tRNA hydrolase -
  C2H96_RS11100 (C2H96_11035) ctc 2188279..2188893 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  C2H96_RS11105 (C2H96_11040) prs 2188978..2189931 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  C2H96_RS11110 (C2H96_11045) glmU 2189954..2191324 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  C2H96_RS11115 (C2H96_11050) spoVG 2191517..2191810 (-) 294 WP_003218346.1 septation regulator SpoVG -
  C2H96_RS11120 (C2H96_11055) ridA 2192005..2192382 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8873.84 Da        Isoelectric Point: 5.0001

>NTDB_id=222365 C2H96_RS11090 WP_120027699.1 2187316..2187546(-) (subA/fin) [Bacillus subtilis strain PK5_68]
MALYYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=222365 C2H96_RS11090 WP_120027699.1 2187316..2187546(-) (subA/fin) [Bacillus subtilis strain PK5_68]
ATGGCTTTGTATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACAA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

98.684

100

0.987