Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   C2H96_RS08950 Genome accession   NZ_CP026035
Coordinates   1767550..1767984 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain PK5_68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1762550..1772984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS08935 (C2H96_08860) epsK 1763179..1764030 (-) 852 WP_120027786.1 cyclic-di-GMP receptor EpsK -
  C2H96_RS08940 (C2H96_08865) - 1764011..1765099 (-) 1089 WP_064671960.1 hypothetical protein -
  C2H96_RS08945 (C2H96_08870) topB 1765302..1767485 (-) 2184 WP_038827751.1 DNA topoisomerase III -
  C2H96_RS08950 (C2H96_08875) lrpC 1767550..1767984 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  C2H96_RS08955 (C2H96_08880) ydzA 1768170..1768460 (+) 291 WP_014475846.1 DUF3817 domain-containing protein -
  C2H96_RS08960 (C2H96_08885) amj 1768505..1769314 (-) 810 WP_015715258.1 lipid II flippase Amj -
  C2H96_RS08965 (C2H96_08890) ydaG 1769822..1770244 (-) 423 WP_014475844.1 pyridoxamine 5'-phosphate oxidase family protein -
  C2H96_RS08970 (C2H96_08895) ydaF 1770322..1770873 (-) 552 WP_003234398.1 GNAT family protein -
  C2H96_RS08975 (C2H96_08900) lyxE 1770960..1771463 (-) 504 WP_120027785.1 D-lyxose ketol-isomerase -
  C2H96_RS08980 (C2H96_08905) ydaD 1771479..1772339 (-) 861 WP_003234401.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=222347 C2H96_RS08950 WP_003246585.1 1767550..1767984(-) (lrpC) [Bacillus subtilis strain PK5_68]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=222347 C2H96_RS08950 WP_003246585.1 1767550..1767984(-) (lrpC) [Bacillus subtilis strain PK5_68]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAATGCGGATTACGAGCGA
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1