Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C2H96_RS08255 Genome accession   NZ_CP026035
Coordinates   1646354..1646995 (-) Length   213 a.a.
NCBI ID   WP_120027824.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1641354..1651995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS08235 (C2H96_08170) mneP 1641413..1642306 (+) 894 WP_120027827.1 manganese transporter MneP -
  C2H96_RS08240 (C2H96_08175) ydfL 1642418..1643230 (+) 813 WP_120027826.1 MerR family transcriptional regulator -
  C2H96_RS08245 (C2H96_08180) ydfK 1643320..1644009 (+) 690 WP_070548617.1 DUF554 domain-containing protein -
  C2H96_RS08250 (C2H96_08185) ydfJ 1644067..1646238 (-) 2172 WP_120027825.1 MMPL family transporter -
  C2H96_RS08255 (C2H96_08190) vraR 1646354..1646995 (-) 642 WP_120027824.1 two-component system response regulator YdfI Regulator
  C2H96_RS08260 (C2H96_08195) ydfH 1646988..1648211 (-) 1224 WP_120027823.1 two-component system sensor histidine kinase YdfH -
  C2H96_RS08265 (C2H96_08200) - 1648482..1648625 (+) 144 WP_014478971.1 hypothetical protein -
  C2H96_RS08270 (C2H96_08205) - 1648622..1648801 (+) 180 WP_010886421.1 hypothetical protein -
  C2H96_RS08275 (C2H96_08210) ydfG 1648887..1649330 (+) 444 WP_014475936.1 carboxymuconolactone decarboxylase family protein -
  C2H96_RS08280 (C2H96_08215) ydfF 1649411..1650091 (-) 681 WP_014478969.1 winged helix-turn-helix domain-containing protein -
  C2H96_RS08285 (C2H96_08220) ydfE 1650181..1650804 (+) 624 WP_029725823.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23987.95 Da        Isoelectric Point: 5.4183

>NTDB_id=222344 C2H96_RS08255 WP_120027824.1 1646354..1646995(-) (vraR) [Bacillus subtilis strain PK5_68]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGISERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=222344 C2H96_RS08255 WP_120027824.1 1646354..1646995(-) (vraR) [Bacillus subtilis strain PK5_68]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCATCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.967

99.061

0.366

Multiple sequence alignment