Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C2H96_RS06075 Genome accession   NZ_CP026035
Coordinates   1222919..1223566 (-) Length   215 a.a.
NCBI ID   WP_085186395.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1217919..1228566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS06050 (C2H96_05965) nsrR 1219515..1219955 (+) 441 WP_014476271.1 nitric oxide-sensing transcriptional repressor NsrR -
  C2H96_RS06055 (C2H96_05970) lytF 1220109..1221575 (+) 1467 WP_120027930.1 peptidoglycan endopeptidase LytF -
  C2H96_RS06060 (C2H96_05975) yhdC 1221617..1221940 (-) 324 WP_014476269.1 YqzG/YhdC family protein -
  C2H96_RS06065 (C2H96_05980) yhdB 1222141..1222383 (+) 243 WP_003233373.1 YhdB family protein -
  C2H96_RS06070 (C2H96_05985) yhdA 1222398..1222922 (-) 525 WP_021479674.1 FMN-dependent NADPH-azoreductase -
  C2H96_RS06075 (C2H96_05990) vraR 1222919..1223566 (-) 648 WP_085186395.1 two-component system response regulator YhcZ Regulator
  C2H96_RS06080 (C2H96_05995) yhcY 1223563..1224702 (-) 1140 WP_021479676.1 two-component system sensor histidine kinase YhcY -
  C2H96_RS06085 (C2H96_06000) pgcA 1224851..1226596 (-) 1746 WP_249848305.1 phosphoglucomutase -
  C2H96_RS06090 (C2H96_06005) glpD 1226728..1228395 (-) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24175.86 Da        Isoelectric Point: 6.3034

>NTDB_id=222336 C2H96_RS06075 WP_085186395.1 1222919..1223566(-) (vraR) [Bacillus subtilis strain PK5_68]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEILK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=222336 C2H96_RS06075 WP_085186395.1 1222919..1223566(-) (vraR) [Bacillus subtilis strain PK5_68]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACTGGATTAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
TAAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395

Multiple sequence alignment