Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   A6J62_RS08005 Genome accession   NZ_CP020408
Coordinates   513922..516051 (+) Length   709 a.a.
NCBI ID   WP_001911453.1    Uniprot ID   -
Organism   Vibrio cholerae strain FDAARGOS_223     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 508922..521051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J62_RS07980 (A6J62_07835) - 509271..509846 (-) 576 WP_000999601.1 PilZ domain-containing protein -
  A6J62_RS07985 (A6J62_07840) lolC 510022..511230 (+) 1209 WP_000468900.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  A6J62_RS07990 (A6J62_07845) lolD 511223..511909 (+) 687 WP_001061290.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  A6J62_RS07995 (A6J62_07850) lolE 511910..513154 (+) 1245 WP_000493010.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  A6J62_RS08000 (A6J62_07855) - 513269..513799 (-) 531 WP_001881633.1 DUF2062 domain-containing protein -
  A6J62_RS08005 (A6J62_07860) comEC 513922..516051 (+) 2130 WP_001911453.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A6J62_RS08010 (A6J62_07865) msbA 516082..517830 (+) 1749 WP_000052153.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  A6J62_RS08015 (A6J62_07870) lpxK 517833..518840 (+) 1008 WP_001994134.1 tetraacyldisaccharide 4'-kinase -
  A6J62_RS08020 (A6J62_07875) - 518821..519000 (+) 180 WP_000350068.1 Trm112 family protein -
  A6J62_RS08025 (A6J62_07880) kdsB 519000..519758 (+) 759 WP_000011329.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 80009.33 Da        Isoelectric Point: 7.7984

>NTDB_id=222326 A6J62_RS08005 WP_001911453.1 513922..516051(+) (comEC) [Vibrio cholerae strain FDAARGOS_223]
MVLLGYHRVGRQFLGFVAAILTIVLQGNLIRDQSNVLYQAGPDIIIKGRVDSFFTQTRYAYEGFVLIHEVNGQTLNKMTR
PRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDLEAHYMAQSVVARAVVKPDTAYQIVQESGIRSSLFFELEQLTHT
SPYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAISGLHIGIAFSVGYFLGLGMMRFHAQLLWSPFVCGALLAVLYAW
LAGFTLPTQRALIMCLLNVALIMLAFPLSALKRILLTLVAVLLWSPFASLSNSFWMSFLAVAIVLYQLASQSQRQVWWKA
LLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVIVPALFLGLLLMVVWPSVAAAYWPWVDWTFLPLDWALQF
ADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLLLGMIGLWWWFPSLTPLWRMDVLDVGHGLAIVIEQDERAIVYDT
GSSWPGGSYVQSVIEPMLQQRGLRQVDGVILSHLDNDHAGDWQGLAERWQPNWIRASQLGTEFMPCIRGESWQWQSLHFT
VLWPPQAVSRAYNQHSCVIRMTDTQSNHSVLLSGDVTAMGEWLLARDGAQLQSEVMIVPHHGSKTSSTAEFIAQVNPKLA
IASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQISLFFYLDQLDWFTQRSLGWQPWYRQMLRKGVE

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=222326 A6J62_RS08005 WP_001911453.1 513922..516051(+) (comEC) [Vibrio cholerae strain FDAARGOS_223]
ATGGTTTTGCTCGGTTATCACCGAGTTGGCCGTCAATTCCTTGGCTTCGTGGCTGCCATACTAACCATTGTGCTACAGGG
CAACCTTATACGAGATCAATCCAATGTGCTCTATCAAGCAGGGCCGGATATTATCATAAAAGGCCGTGTTGACAGCTTTT
TTACGCAAACTCGTTACGCTTATGAGGGTTTTGTCCTCATTCATGAAGTGAATGGACAAACCTTAAACAAAATGACTCGC
CCTCGCATACGTTTAAGTGCCCCTTTACTGTTACAACCCAATGATCGCGTCGAATTTTCGGTAACTCTCAAGCCGATAGT
GGGTCGACTCAACCAAACCGGCTTTGATTTAGAAGCGCATTACATGGCGCAATCTGTCGTCGCACGAGCGGTCGTAAAAC
CTGACACTGCTTATCAAATTGTGCAAGAGAGTGGCATAAGGTCAAGTTTGTTTTTTGAGCTAGAGCAATTAACGCATACC
AGCCCATACCAAGGATTGATCTTAGCCCTGACGTTTGGCGAGCGAAAAGGTATTGATGAGCAAGAGTGGCAAGCCTTACG
CAATAGTGGCTTAATTCATTTAGTGGCCATTTCGGGGCTGCACATTGGTATCGCTTTTAGCGTGGGGTATTTTCTCGGGC
TCGGCATGATGCGTTTTCATGCTCAGTTATTGTGGTCCCCTTTTGTGTGTGGGGCTTTACTGGCGGTGCTCTACGCTTGG
CTGGCCGGATTTACGTTGCCTACTCAGCGTGCATTGATTATGTGCTTACTCAATGTGGCGTTGATCATGTTGGCTTTTCC
TCTTTCCGCGCTCAAGCGGATTCTACTCACCTTAGTCGCGGTCTTGCTTTGGTCGCCATTCGCCTCACTTTCAAACAGTT
TCTGGATGTCGTTTTTGGCGGTCGCGATTGTTCTCTACCAATTAGCCAGTCAAAGCCAGCGTCAGGTGTGGTGGAAAGCT
CTTCTTTGGGCGCAGGTGTTCCTCGTCTGTTTAATGGCACCGGTCACGGCCTATTTTTTCGGTGGCTTAAGCGTAACGGC
AGTTCTGTACAATTTGGTGTTTATTCCTTGGTTTTCGTTGGTGATTGTCCCAGCTTTGTTTTTGGGTCTATTACTCATGG
TGGTATGGCCTAGTGTGGCCGCCGCTTACTGGCCTTGGGTGGATTGGACGTTTTTACCGCTCGATTGGGCTTTGCAGTTT
GCCGATGTAGGCTGGTGGGTGGTCCCCAGCAAAGTACAAGGTGTGGTCGCAGCGAGTGTGGCCATCCTCTTGCTTTATCG
ATTTATGAGCCTAAAAGCCTGCAGCTTATTATTGGGTATGATTGGCTTATGGTGGTGGTTTCCCTCTCTCACTCCACTTT
GGCGAATGGATGTGCTGGATGTTGGACATGGCTTGGCGATTGTGATTGAGCAAGATGAGCGAGCAATTGTCTACGATACA
GGCAGCAGTTGGCCGGGAGGCAGCTATGTGCAAAGCGTGATTGAGCCTATGCTCCAACAGCGGGGGCTACGCCAAGTGGA
TGGAGTGATTTTAAGTCATCTTGATAATGATCATGCGGGTGATTGGCAAGGTTTAGCTGAGCGCTGGCAACCCAATTGGA
TTCGTGCCAGCCAACTCGGGACAGAGTTTATGCCTTGTATCCGTGGTGAAAGCTGGCAGTGGCAATCTCTCCATTTTACG
GTGTTATGGCCACCACAAGCGGTTAGCCGAGCGTACAACCAGCATTCGTGTGTGATTCGTATGACCGATACTCAGTCTAA
CCATTCTGTACTGCTCTCCGGGGATGTCACAGCCATGGGGGAGTGGCTGCTTGCTCGCGACGGAGCGCAACTGCAAAGTG
AGGTGATGATCGTGCCGCACCACGGCAGTAAAACATCGTCCACCGCAGAGTTTATTGCCCAAGTGAATCCCAAACTTGCG
ATTGCTTCTGTGGCGAAAGATAACCGCTGGAATTTGCCTAATCCGCAAGTCGTGGCACGTTATCAAGCTCAGCAAGTTGA
GTGGCTAGATACTGGACACGCTGGGCAAATTAGCCTCTTTTTCTATCTAGATCAGCTGGATTGGTTTACCCAGCGTAGCC
TTGGCTGGCAGCCTTGGTATAGGCAGATGCTGCGTAAAGGAGTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(6-135)

Competence protein (Competence)

(170-426)

Metallo-beta-lactamase superfamily (Lactamase_B)

(461-641)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

100

100

1
  comEC Vibrio parahaemolyticus RIMD 2210633

41.433

100

0.416
  comEC Vibrio campbellii strain DS40M4

41.301

99.718

0.412

Multiple sequence alignment