Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C2H96_RS04455 Genome accession   NZ_CP026035
Coordinates   916475..917611 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 911475..922611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS04415 (C2H96_04330) xre 911808..912149 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  C2H96_RS04420 (C2H96_04335) xkdA 912312..912908 (+) 597 WP_024572596.1 ImmA/IrrE family metallo-endopeptidase -
  C2H96_RS04425 (C2H96_04340) xpdC 912952..913788 (-) 837 WP_003245071.1 manganese catalase family protein -
  C2H96_RS04430 (C2H96_04345) pghB 913865..914467 (-) 603 WP_249848256.1 poly-gamma-glutamate hydrolase family protein -
  C2H96_RS04435 (C2H96_04350) yjqA 914573..914950 (+) 378 WP_015715726.1 PH domain-containing protein -
  C2H96_RS04440 (C2H96_04355) xlyB 914990..915943 (-) 954 WP_129092966.1 N-acetylmuramoyl-L-alanine amidase -
  C2H96_RS04445 (C2H96_04360) yjpA 916064..916321 (+) 258 WP_003232731.1 YciI family protein -
  C2H96_RS04450 (C2H96_04365) phrA 916351..916485 (-) 135 WP_128747066.1 phosphatase RapA inhibitor PhrA -
  C2H96_RS04455 (C2H96_04370) rapC 916475..917611 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  C2H96_RS04460 (C2H96_04375) yjoB 917756..919027 (-) 1272 WP_249848258.1 ATPase YjoB -
  C2H96_RS04465 (C2H96_04380) yjoA 919176..919640 (+) 465 WP_014479541.1 DinB family protein -
  C2H96_RS04470 (C2H96_04385) yjnA 919865..920629 (+) 765 WP_038828729.1 sulfite exporter TauE/SafE family protein -
  C2H96_RS04475 (C2H96_04390) uxaA 920668..922161 (-) 1494 WP_249848260.1 altronate dehydratase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=222315 C2H96_RS04455 WP_015252291.1 916475..917611(-) (rapC) [Bacillus subtilis strain PK5_68]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=222315 C2H96_RS04455 WP_015252291.1 916475..917611(-) (rapC) [Bacillus subtilis strain PK5_68]
TTGAGGATGAAGCAGACGATTCCGTCCTCATATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTGGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTACTATAAACGGGCAGAAAAGAATCTTGCTCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAGGAGCTGGCGCATGATGCTGCCCAATTCTATAT
TGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418