Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   C2H96_RS02070 Genome accession   NZ_CP026035
Coordinates   459115..459546 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain PK5_68     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 454115..464546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS02060 (C2H96_01995) hexA 455599..458175 (-) 2577 WP_120028098.1 DNA mismatch repair protein MutS Machinery gene
  C2H96_RS02065 (C2H96_02000) cotE 458308..458853 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  C2H96_RS02070 (C2H96_02005) ymcA 459115..459546 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  C2H96_RS02075 (C2H96_02010) miaB 459548..461077 (-) 1530 WP_049140040.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  C2H96_RS02080 (C2H96_02015) kbl 461225..462403 (-) 1179 WP_015715903.1 glycine C-acetyltransferase -
  C2H96_RS02085 (C2H96_02020) tdh 462416..463459 (-) 1044 WP_049140039.1 L-threonine 3-dehydrogenase -
  C2H96_RS02090 (C2H96_02025) spoVS 463724..463984 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=222294 C2H96_RS02070 WP_003231834.1 459115..459546(-) (ymcA) [Bacillus subtilis strain PK5_68]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=222294 C2H96_RS02070 WP_003231834.1 459115..459546(-) (ymcA) [Bacillus subtilis strain PK5_68]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGTTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1