Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   C2H94_RS18395 Genome accession   NZ_CP026034
Coordinates   3490233..3490682 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain PK5_52     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3485233..3495682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS18355 (C2H94_18285) ctaE 3485251..3485874 (+) 624 WP_038828405.1 cytochrome c oxidase subunit III -
  C2H94_RS18360 (C2H94_18290) ctaF 3485877..3486209 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  C2H94_RS18365 (C2H94_18295) ctaG 3486236..3487129 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  C2H94_RS18370 (C2H94_18300) ylbA 3487161..3487523 (-) 363 WP_072175372.1 YugN family protein -
  C2H94_RS18375 (C2H94_18305) ylbB 3487663..3488109 (+) 447 WP_003221362.1 CBS domain-containing protein -
  C2H94_RS18380 (C2H94_18310) ylbC 3488193..3489233 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  C2H94_RS18385 (C2H94_18315) ylbD 3489464..3489862 (+) 399 WP_003232233.1 YlbD family protein -
  C2H94_RS18390 (C2H94_18320) ylbE 3489878..3490117 (+) 240 WP_003232231.1 YlbE-like family protein -
  C2H94_RS18395 (C2H94_18325) ylbF 3490233..3490682 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C2H94_RS18400 (C2H94_18330) ylbG 3490737..3491009 (+) 273 WP_009967171.1 YlbG family protein -
  C2H94_RS18405 (C2H94_18335) rsmD 3491332..3491886 (+) 555 WP_124073195.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C2H94_RS18410 (C2H94_18340) coaD 3491891..3492376 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C2H94_RS18415 (C2H94_18345) spoVV 3492387..3493613 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  C2H94_RS18420 (C2H94_18350) ylbK 3493794..3494576 (+) 783 WP_064671351.1 patatin family protein -
  C2H94_RS18425 (C2H94_18355) sepM 3494578..3495603 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=222268 C2H94_RS18395 WP_003221370.1 3490233..3490682(+) (ylbF) [Bacillus subtilis strain PK5_52]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=222268 C2H94_RS18395 WP_003221370.1 3490233..3490682(+) (ylbF) [Bacillus subtilis strain PK5_52]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1