Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   C2H94_RS18425 Genome accession   NZ_CP026034
Coordinates   3494578..3495603 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain PK5_52     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3489578..3500603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS18390 (C2H94_18320) ylbE 3489878..3490117 (+) 240 WP_003232231.1 YlbE-like family protein -
  C2H94_RS18395 (C2H94_18325) ylbF 3490233..3490682 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C2H94_RS18400 (C2H94_18330) ylbG 3490737..3491009 (+) 273 WP_009967171.1 YlbG family protein -
  C2H94_RS18405 (C2H94_18335) rsmD 3491332..3491886 (+) 555 WP_124073195.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C2H94_RS18410 (C2H94_18340) coaD 3491891..3492376 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C2H94_RS18415 (C2H94_18345) spoVV 3492387..3493613 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  C2H94_RS18420 (C2H94_18350) ylbK 3493794..3494576 (+) 783 WP_064671351.1 patatin family protein -
  C2H94_RS18425 (C2H94_18355) sepM 3494578..3495603 (+) 1026 WP_003245451.1 protease DdcP Regulator
  C2H94_RS18430 (C2H94_18360) ylbM 3495620..3496867 (-) 1248 WP_041850860.1 nucleotidyltransferase -
  C2H94_RS18435 (C2H94_18365) - 3496864..3497049 (-) 186 WP_003232215.1 hypothetical protein -
  C2H94_RS18440 (C2H94_18370) ylbN 3497077..3497595 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  C2H94_RS18445 (C2H94_18375) rpmF 3497617..3497796 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  C2H94_RS18450 (C2H94_18380) gerR 3497942..3498523 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  C2H94_RS18455 (C2H94_18385) ylbP 3498580..3499062 (-) 483 WP_014476736.1 N-acetyltransferase -
  C2H94_RS18460 (C2H94_18390) - 3499222..3500118 (+) 897 WP_072176017.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=222269 C2H94_RS18425 WP_003245451.1 3494578..3495603(+) (sepM) [Bacillus subtilis strain PK5_52]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=222269 C2H94_RS18425 WP_003245451.1 3494578..3495603(+) (sepM) [Bacillus subtilis strain PK5_52]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402