Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   A6J55_RS02455 Genome accession   NZ_CP020403
Coordinates   539457..541850 (-) Length   797 a.a.
NCBI ID   WP_192940805.1    Uniprot ID   -
Organism   Pasteurella multocida strain FDAARGOS_216     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 534457..546850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J55_RS02435 (A6J55_02440) kdsB 535675..536451 (-) 777 WP_005754311.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A6J55_RS02440 (A6J55_02445) - 536453..536635 (-) 183 WP_005716837.1 Trm112 family protein -
  A6J55_RS02445 (A6J55_02450) lpxK 536647..537624 (-) 978 WP_005754313.1 tetraacyldisaccharide 4'-kinase -
  A6J55_RS02450 (A6J55_02455) msbA 537656..539404 (-) 1749 WP_005754315.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  A6J55_RS02455 (A6J55_02460) rec2 539457..541850 (-) 2394 WP_192940805.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A6J55_RS02460 (A6J55_02465) dksA 542147..542584 (+) 438 WP_005716860.1 RNA polymerase-binding protein DksA -
  A6J55_RS02465 (A6J55_02470) pcnB 542672..544177 (+) 1506 WP_005754319.1 polynucleotide adenylyltransferase PcnB -
  A6J55_RS02470 (A6J55_02475) folK 544189..544686 (+) 498 WP_005716864.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  A6J55_RS02475 (A6J55_02480) - 544673..545755 (-) 1083 WP_005716866.1 homoserine O-acetyltransferase -
  A6J55_RS02480 (A6J55_02485) - 545918..546628 (+) 711 WP_005722678.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 91131.55 Da        Isoelectric Point: 9.7827

>NTDB_id=222239 A6J55_RS02455 WP_192940805.1 539457..541850(-) (rec2) [Pasteurella multocida strain FDAARGOS_216]
MKNALLSMSVVTVFSACSLLWLPEHFLLHWHITLLVFALLLVSIIICVLCGKNHWISPLIFVMSSVGILGYIHDQARQTL
LQADLVAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLSPQQAKQKMILQWHAQEKAQIGEIWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLREGVKQTMQLEYQGLLLALAFGERAWLPTDIWQTYQKTNTAHVIAI
SGLHIGLAMGIGYFFIRLIQFLLPLKWVTPTLPIIVGLLFAWFYAELAGFSIPTSRAFFALTVVSWVKLWRRSYSVWQFF
LLVVALLLLGEPCMILSSSFWLSVGAVSVLMLWYQIFPLSLLHWRGKKITESPWRNCRWLFSLLHLQLGLLWLFTPVQLL
LFQGIALTSFMANVLVVPIYSVILIPLILLAVITQGAFSFWSIANTIAKYVTMLLTPLQSHWVVFSQQEILCLIAILALT
FIILIWYLYDFKKESLKCYAKVPRFFHLNQMRQLNPSLKWKTYLLAVVISLYCFLQILYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIELEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQNYGKTDRT
FCEAGKTWTWQLLTFKALSPTKIVKRAKNTDSCVLLISDGSHHLLLTGDADIAAEKQFVNQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTAVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=222239 A6J55_RS02455 WP_192940805.1 539457..541850(-) (rec2) [Pasteurella multocida strain FDAARGOS_216]
ATGAAAAACGCTCTTTTGTCAATGTCTGTCGTGACCGTATTCAGCGCCTGTTCGTTACTTTGGCTACCTGAACATTTCTT
GCTTCATTGGCACATAACATTGTTAGTCTTCGCATTATTGCTAGTCAGCATAATCATTTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTCTGATCTTTGTAATGAGTTCAGTAGGCATTTTAGGCTATATTCACGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGGTTGCTCAACTGCCTCGAAAGATAGAGACAGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTGGTTTCTGCACAATTGTCTCCGCAACAAGCAAAACAAAAAATGATTCTTCAATGGCACGCGCAAG
AAAAGGCACAGATAGGGGAGATTTGGAAAGGAGAGCTACGGCTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCAACGGTAAAAAGTGCGGTCAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTGCGAGAGGGAGTGAAACAGACCATGCAGCTGGAATATCAAGGGCTGTTACTTGCGCTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGACATTTGGCAAACTTATCAAAAAACTAACACAGCACATGTGATTGCGATA
TCGGGTTTACATATTGGGCTTGCGATGGGAATAGGTTATTTCTTTATTCGTTTAATTCAGTTCCTATTGCCATTAAAGTG
GGTGACACCGACCTTGCCAATCATTGTTGGGCTTCTTTTTGCATGGTTTTATGCTGAGTTGGCGGGCTTTAGTATTCCAA
CATCACGCGCGTTTTTTGCTTTAACTGTCGTGTCGTGGGTAAAACTTTGGCGGCGTTCTTATTCTGTTTGGCAATTTTTT
TTATTAGTTGTTGCTTTGTTATTGCTAGGTGAACCATGTATGATTTTATCGAGCAGTTTCTGGCTGTCGGTTGGTGCTGT
GAGTGTATTAATGCTTTGGTATCAAATTTTTCCGCTGTCTTTATTACATTGGCGAGGAAAAAAGATCACAGAGAGTCCTT
GGCGCAACTGTCGTTGGCTCTTTAGTCTTCTTCATTTGCAACTTGGTTTATTGTGGCTTTTTACTCCCGTTCAATTATTG
CTTTTTCAGGGAATAGCTTTAACGAGCTTTATGGCGAATGTGCTTGTGGTGCCTATCTATAGTGTGATTTTAATACCATT
GATTTTATTGGCGGTGATCACTCAAGGGGCATTTTCCTTTTGGTCTATTGCAAATACTATTGCGAAATATGTCACGATGC
TTTTAACTCCATTACAATCTCATTGGGTTGTATTCTCACAGCAGGAAATACTCTGCCTGATCGCGATCTTAGCTTTAACT
TTTATTATATTGATTTGGTATCTCTATGATTTTAAAAAAGAATCACTGAAGTGCTACGCTAAAGTACCACGTTTTTTTCA
TCTTAATCAAATGCGGCAGTTAAATCCGTCTTTAAAATGGAAAACTTATTTACTCGCTGTTGTCATCAGTCTTTACTGTT
TCTTACAGATACTTTATAAGGAGATATCTCAACCGCTTTGGCGTTTAGATACGCTCGATGTTGGACAAGGGTTAGCTAAC
TTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCGTCTTGGGCGGGAGGAAGTATGGCGGAACTGGAAAT
TATACCCTATTTACAAAGAGAGGGGATTGAGTTAGAACAGGTGATTTTAAGCCATGATGATAATGATCATGTCGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACGGCGTCTGCTCAAAATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGTAAAACCTGGACTTGGCAACTCTTAACATTCAAAGCCCTTTCACCGACTAAAATAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTCATCATCTCCTCTTAACTGGTGATGCAGATATTGCTG
CGGAAAAGCAGTTTGTGAATCAGTTAAGTCAACTTGATGTGTTACAAGTTGGACATCATGGCAGTAAAACGTCAACAGGG
TATGAACTTCTTTATCAAACACGACCAAAAATCGCACTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGGCTGTATATAACACTGGTGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCTAAACACATCGAGATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)

Competence protein (Competence)

(213-487)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.818

96.612

0.501

Multiple sequence alignment