Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   C2H94_RS14560 Genome accession   NZ_CP026034
Coordinates   2780266..2780982 (+) Length   238 a.a.
NCBI ID   WP_077671652.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2775266..2785982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS14545 (C2H94_14480) yfkQ 2775347..2776888 (-) 1542 WP_103803343.1 spore germination protein -
  C2H94_RS14550 (C2H94_14485) treP 2777077..2778489 (+) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  C2H94_RS14555 (C2H94_14490) treC 2778560..2780245 (+) 1686 WP_032726654.1 alpha,alpha-phosphotrehalase -
  C2H94_RS14560 (C2H94_14495) treR 2780266..2780982 (+) 717 WP_077671652.1 trehalose operon repressor Regulator
  C2H94_RS14565 (C2H94_14500) hypO 2781122..2781787 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27869.87 Da        Isoelectric Point: 7.1736

>NTDB_id=222233 C2H94_RS14560 WP_077671652.1 2780266..2780982(+) (treR) [Bacillus subtilis strain PK5_52]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTVQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=222233 C2H94_RS14560 WP_077671652.1 2780266..2780982(+) (treR) [Bacillus subtilis strain PK5_52]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGTACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAATGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416

Multiple sequence alignment