Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   A6J54_RS12070 Genome accession   NZ_CP020402
Coordinates   2037171..2038238 (+) Length   355 a.a.
NCBI ID   WP_080542314.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 2032171..2043238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS12040 (A6J54_11660) - 2032394..2032954 (-) 561 WP_226876318.1 uracil-DNA glycosylase family protein -
  A6J54_RS12045 (A6J54_11665) rsmA 2033300..2034079 (+) 780 WP_002229195.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  A6J54_RS12050 (A6J54_11670) - 2034252..2034980 (+) 729 WP_002217681.1 amino acid ABC transporter ATP-binding protein -
  A6J54_RS12055 (A6J54_11675) - 2035049..2035408 (+) 360 WP_080542311.1 hypothetical protein -
  A6J54_RS12060 (A6J54_11680) - 2035413..2035853 (+) 441 WP_080542312.1 protein YgfX -
  A6J54_RS12065 (A6J54_11685) folC 2035884..2037158 (+) 1275 WP_080542313.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  A6J54_RS12070 (A6J54_11690) tpc 2037171..2038238 (+) 1068 WP_080542314.1 cell division protein FtsN Machinery gene
  A6J54_RS12075 (A6J54_11695) - 2038231..2038728 (+) 498 WP_080542315.1 CvpA family protein -
  A6J54_RS12080 (A6J54_11700) purF 2038936..2040480 (+) 1545 WP_080542316.1 amidophosphoribosyltransferase -
  A6J54_RS12085 (A6J54_11705) greB 2040580..2041071 (+) 492 WP_002214159.1 transcription elongation factor GreB -
  A6J54_RS12090 (A6J54_11710) - 2041130..2041756 (+) 627 WP_002221271.1 phosphoribosylanthranilate isomerase -

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 37928.26 Da        Isoelectric Point: 9.6172

>NTDB_id=222233 A6J54_RS12070 WP_080542314.1 2037171..2038238(+) (tpc) [Neisseria meningitidis strain FDAARGOS_215]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCLLLAAALSSDPAENPPAAPTDETGSMENQAASTVQTPTLKSASEG
VEPAADKPQDLASEEQAPAADNGISEPEDVGAPLVIINDRLDDSNIKGLESSAKPKQGEAAEKPQQAETAKTAPKQAKQR
AAEKVSATADSTDTVAVEKPKRTAETKPQKAERTAEAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADK
AEGKKTAEKDHSDGKKHETAQKSDKADKTKTAEKEKSEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNG
KVYRVKSSNYKNARDAERDLNKLRVHGIAGQVTNE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=222233 A6J54_RS12070 WP_080542314.1 2037171..2038238(+) (tpc) [Neisseria meningitidis strain FDAARGOS_215]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGTCTCGTAACGGC
AAGCTGCCTGGTTGCCGCCTCCTGCCTGCTGCTGGCGGCCGCCCTCAGTTCCGATCCTGCCGAAAATCCCCCTGCCGCAC
CGACTGACGAAACAGGCAGCATGGAAAACCAAGCGGCAAGCACGGTACAAACCCCGACCTTAAAATCCGCCTCAGAAGGT
GTTGAACCCGCCGCCGACAAACCTCAAGACCTGGCCAGTGAAGAACAAGCACCTGCCGCCGACAATGGAATCAGCGAACC
TGAAGACGTAGGCGCACCATTGGTCATCATCAACGACCGACTCGACGACAGCAATATCAAAGGCTTGGAGTCATCCGCAA
AACCGAAACAGGGAGAAGCTGCCGAGAAACCGCAGCAGGCAGAAACTGCCAAAACCGCACCGAAGCAGGCAAAACAACGC
GCTGCCGAAAAAGTGTCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCGAAACGCACTGCCGAAACAAA
ACCGCAAAAAGCGGAACGCACTGCCGAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGCCGAAAAAGTTGCCGACAAAC
CGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAGAAGCGAAAAAAGCCGACAAG
GCTGAAGGCAAAAAAACAGCCGAAAAAGACCATTCGGACGGCAAAAAACACGAAACGGCACAAAAAAGCGACAAAGCGGA
CAAGACCAAAACCGCCGAAAAAGAAAAATCCGAAAAATCCGGCAAAAAAGCCGCCATTCAGGCAGGTTATGCCGAAAAAG
AACGCGCCTTGAGCCTCCAGCGCAAAATGAAAGCGGCGGGTATCGATTCGACCATTACTGAAATCATGACCGACAACGGC
AAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAGCGCGATTTGAACAAACTGCGCGTGCACGG
CATCGCCGGTCAGGTAACGAATGAATAA

Domains


Predicted by InterproScan.

(282-353)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

86.197

100

0.862


Multiple sequence alignment